Scyliorhinus canicula (smaller spotted catshark): 119978078
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Entry
119978078 CDS
T11175
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a
KO
K06757
neurofascin
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
119978078 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119978078 (nfasca)
Cell adhesion molecules [BR:
scau04515
]
Immunoglobulin superfamily
L1 family
119978078 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
fn3
Ig_2
ig
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Bravo_FIGEY
C2-set_2
Ig_5
Ig_6
DUF4998
BiPBP_C
Herpes_gE_N
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
119978078
NCBI-ProteinID:
XP_038675389
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All DBs
Position
15:complement(134019949..134265737)
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AA seq
1349 aa
AA seq
DB search
MLLRERIFLHTGLVCILSLCHLIASIEVPLDPSLQRELAQPPTITKQSPKDYIVDPRDNV
VIYCEGKGNPTPAFSWTRNGKFFNVAKDSRVSMRSRSGTLTMDFRYSGRAEDYEGEYQCS
ARNDHGTALSHKIVLRVSKAPLWRKEVLEPFVVQEGAPVILPCQPPAGLPSPVIFWMDSL
MESIPQDKRVSQGLNGDLYFSNVVRGDARFDYICNARFLFTHTIQQKNPITIRVMTMGTS
YESVPTILNETGARPVTEQIPRFMSPTGTSSSRIILRGEDLLLECIASGVPTPDIIWYKK
GGELPWPKVRIENYNKTLRISDVSEENSGEYFCLASNKMGSIRHTITVRVKASPYWLNEP
QNLVLAPGEYGRLMCQAYGNPKPNIQWLVNGEPIEKVRQSPSLEIHGDTIIFREAQIGSS
AVYQCNASNEHGYLLANAFVSILDVQPRILSRRNQLVKVIENNRTKLECRFFGSPIPTLR
WFKDGQGNNLYGGNYIIKDNGTLELRRTRKADEGTYTCIATNTLGKAENRVRLEVKDPTR
IIRSPESTTVKRSLAAKFECKVRHDPTLRLTVTWLKDDKVLSLPWRMKKDEDSLTIINVS
ERDEGIYTCVASTELDSDSAKARLTVLVVPSTQITPLAAVLKDRPDPPRDLELTDPTDRS
IRLTWIPGDDNNSPITGFIVQFEENMFEPRKWHNLTRIPGNINSAVLELSPYVNYQFRVI
AVNQVGEGAPSLPSERYQTTGTAPERNPTDVSGAGISRSSMEIKWTPLNGTQISGPNLKY
IVSWRQRDVRGEWSTVMVTRSSYVVSPTPFFTSYEIKVQAINDFGAGPEPRIIIGYSGED
YPIAAPTSISGRIVNSTAILLQWRSLPPDTIQGYLTGYRIQYWTEGSLLKASRFRSRIKV
MESAGQRPRAIVSGMQPYSAYKLQVAAVNGRGRGPWSEEFAINTTEGVPGKPGSLRIRQP
DLESITLQWTPPRDPNGIITGYAIMYHPLTGSRARRNSTIPRLGPEVTTYKLERVDANTR
YRFYVFAQTRQGLGEAIVLDSPDFENEATPTPEIAKTEGVVSRFAPVPTIPAATTAATTT
ISTTSATPPTTTVTEAAQPAVTGTHIYVEPLSRICNLTTSAGNDSVNITWSHTFPGELAE
FTVEYIHSNGTVKQEHVKAGQSAVRLLGLTPGTLYKVRVFSTLFQTVTSNTVTIETSPAF
TNSHVDIATQGWFIGLMCAVALLVLILLIVCFIKRSRGGKYPVKTTEENRPSQDDNGYLP
RLDKRSLESDNEDSKKPQGSQSSVDGTVKQEESDDSIVIYGDGDGNSRFGEDGSFIGQYT
VKKDKEETEGNDSSEATSPVNPPYPLAQM
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgctactaagggagaggatctttctgcacactggattggtgtgcatcttgtcactgtgc
catctgattgcatccatcgaagtccctctcgacccaagccttcagagagagttggcccag
cctccaaccatcaccaaacagtctccaaaagattacatcgtagacccgcgggataacgta
gttatctactgcgaagggaaggggaacccaactcctgccttctcgtggacccgcaatgga
aagttcttcaacgttgccaaagattccagagtatcgatgagatcacgttcggggaccctc
acgatggactttcgttacagtggccgagcggaggattatgagggggagtatcagtgctca
gccagaaatgaccatgggactgcactctcccataaaatagtcctccgagtctccaaggcc
cccctgtggaggaaggaggtcctggagccctttgtggttcaggaaggagcaccggtgatt
ctaccctgccaacccccggctggtctcccctctccggtcatcttctggatggacagcttg
atggagtcgattcctcaggacaagcgcgtctctcagggcctgaacggggacctctacttc
tccaatgtggtgcgcggcgatgctcgcttcgattacatctgtaatgctcggttcctcttc
acacacactatccaacagaaaaaccccatcacgatcagggttatgaccatgggtaccagt
tatgaatcagtgccaaccattctgaatgaaactggtgctcgaccagtcacagagcaaatc
ccaaggttcatgtcaccgacgggaacgtccagcagcagaatcattctacgaggagaagac
cttctactggaatgcatcgcatcaggagtgcccacaccggatattatttggtacaagaaa
ggtggggaactgccatggccaaaggtacgaatcgaaaactacaacaagacattgaggatc
tcggacgtctccgaagaaaactcgggcgagtacttttgcctggcttcaaataaaatggga
agcataaggcacaccatcacagtgagagtgaaagcttctccttattggttgaacgagcca
cagaatttggtgctggctcccggggaatatggcagattgatgtgtcaagcctatgggaac
cccaaacctaatatccagtggctggtgaatggtgaacctatcgaaaaggttcgccagagc
ccaagtcttgaaattcacggggatacgatcatcttccgagaggcacagattggaagcagt
gccgtataccagtgcaacgcctccaatgagcacggatacttactggccaatgcgtttgtc
agcatccttgatgttcaaccgaggatactatcccgaaggaaccaacttgtcaaagtgata
gaaaataaccggacaaagcttgagtgtcgtttctttggttcgccaatccccaccctgcga
tggtttaaggatgggcagggcaataatctttatggaggaaactacatcattaaggacaac
ggaactttagaattgcggcgaacgcggaaggccgacgaaggaacctacacttgtatcgcg
actaacacactaggcaaggctgagaaccgggtacgactcgaggtcaaagaccccacacgg
attatacggtctccagaatctactacagttaaaagatctcttgctgcaaaatttgaatgt
aaagtgagacacgatccaacattaagactgacggttacctggctaaaagatgacaaagtt
ctgtccttgccttggaggatgaagaaagatgaagattcattaacgataatcaacgtgtct
gagcgagacgagggaatctacacatgtgtagccagtacagagctggacagtgactcggcc
aaggcacgcctcactgttctagttgtcccttccacccaaattaccccgcttgctgctgta
ctgaaagatcgccctgatccaccccgagatctggaactaacggacccaacagatcggagt
ataagattgacatggattcctggcgacgacaataacagtccaatcacaggattcattgtg
cagttcgaagaaaacatgtttgagcccagaaagtggcataacttgaccagaatcccaggc
aatatcaactccgccgtgttagagctctctccatacgttaactaccagttccgggtgatc
gcggtgaatcaagttggtgaaggtgcccccagtttgccttctgaacgttaccagacaact
ggaacagctcccgagagaaatccgactgatgtcagcggggcaggaatatcaagatccagc
atggagatcaaatggacgcctctgaatggcacgcagatcagtggacccaatctcaaatac
atagtcagctggagacaaagagatgtgcgtggggagtggtcaacggtcatggtcaccagg
tcttcttatgtcgtctcaccgacacccttctttacgtcatatgagattaaagtgcaggcg
atcaatgactttggagcaggtcctgaaccaagaattataattggatactcgggtgaagac
tatcctattgcagcacccactagtatttctggaaggattgtcaacagcactgctattcta
ctgcagtggaggtcattgccaccggataccattcagggatatcttactgggtacagaatt
cagtattggactgagggaagtctgctgaaggccagccgattcaggtcacgtatcaaggtg
atggagtccgctggacaacgcccacgtgccattgtgtccggaatgcaaccatacagcgcc
tacaagctgcaagtggcagcggtcaatggcagaggtcggggtccctggagtgaagaattt
gcaataaacaccactgaaggagtgcccgggaaaccaggttccctaaggatcaggcagcca
gatttggaaagcatcacgttgcaatggacacctccacgtgatccaaatggcatcatcacc
ggctatgcaataatgtatcacccactgactggttcccgggcaaggcgcaattccacaatt
cccaggcttgggcctgaagtgaccacttacaagctggaacgggttgatgcgaacaccagg
tacaggttttacgtctttgctcagacccgccaagggctcggagaagccatcgtgttggat
tcacctgactttgaaaacgaagccactcctactcctgagattgcaaaaacagaaggagtc
gtgtcaaggtttgcacccgtgccaaccattccggctgcaaccaccgccgccactaccacc
atctcaacaaccagcgccactcccccaaccaccaccgtcactgaggctgcccagccggcc
gtcacaggcacccatatttatgtggaacctctcagtaggatatgcaatctcaccacgtca
gcaggcaatgactccgtcaatatcacgtggagtcacaccttcccgggcgaactggctgag
ttcacagttgaatacattcacagtaacggtacggtgaaacaggagcacgtgaaggcgggt
cagagcgctgtccggctcctgggtctaactcctgggaccctgtacaaagtcagagtgttt
tcaaccctgttccaaacagttaccagcaacaccgttaccattgagaccagcccagcattc
actaacagtcatgtagacatcgcgacacagggctggttcatcggcctgatgtgtgctgtg
gcactcctggtgttgattctgctgatcgtgtgtttcataaagagaagtcgtggaggcaaa
tacccagttaagaccacggaggaaaaccgaccctcacaagatgacaacggatacttaccc
aggctggataagagatctctagaaagcgacaatgaagacagcaaaaagcctcaaggcagc
cagtcttcagtggacgggacggtgaagcaggaggagagcgatgacagcatagtcatctac
ggcgatggtgacggcaattcccgattcggcgaggacggttccttcatcggtcaatacacg
gtcaaaaaggacaaagaggagaccgagggcaacgacagctctgaggctacgtctccagtt
aatcccccctatcccttggcacaaatgtga
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