Scyliorhinus canicula (smaller spotted catshark): 119978179
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Entry
119978179 CDS
T11175
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119978179 (ddx20)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119978179 (ddx20)
Spliceosome [BR:
scau03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
119978179 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ADH_Fe_C
Motif
Other DBs
NCBI-GeneID:
119978179
NCBI-ProteinID:
XP_038675539
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All DBs
Position
15:130672483..130696674
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AA seq
759 aa
AA seq
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MALFSCCLQVLILAPTREIAVQIHSVITAIGIKMEALECHVFIGGTPLNLDKMRLRKCHV
AVGSPGRIKQLIEIGFLPTASIRLFVLDEADKLLEEGSFQEQINWIYSSLPSNKQMVALS
ATYPESLAHHLTRYMRDPSFVRLNPTDPALIGLKQFYKVVNSYPLPHKIFEEKMQHLLEL
FSKIPFNQALVFSNLHSRAQRLADILTSKGLPAVCISGSMNQNQRLEAMSKLKQFKCRVL
ISTDLTSRGIDAEKVNLVVNLDVPQDWETYMHRIGRAGRFGTQGLAVTYCCRGEEENELG
LIAQRCNLQLLSLPDPIPPGLLEEPIDWDVEIIKVQESTNSSLAETSPPTEVEHSVTVKQ
QNADPEPLTLLPVEPTGKRFTSRKVQKARKAPAEKEPQEALGVDVGRAPEVSICHIPDND
IKMKVQSNLRDPTSYDGYQASSEQALITPQSRKALQESLPKIPALTLFKKRSKRGKRSLN
FVEIVEDYESFLAERNNKPVEVVRRWTGFAGTLKEKSLNEDEDSESRELMSREQNSSLFL
SNRDMMCLYTSQKRANPAVLDGQDSSDSSSSASSSTRSRTSSRESSTEAEVPMIARVHDE
GLWRKGTSPVPEDYNNQSGRSLPAFQPHSGFKGRASPDHSSYSHSKRPLEKDPGLGFKST
SLKGSLPQGSRKRSKGDPTSGSAETTKAPSDQAAGSMEGKRELPAEPECSGDYWKAYYRA
WRSYYATIGYPYYGSSKRNSNWLNAYQMNSVYLQELLKP
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggccctgttttcctgttgcttacaggttctcattctggcacctaccagggaaattgct
gtacagatccattctgtcattacagcaattggcattaaaatggaggccctagaatgccat
gtcttcatcggagggaccccattgaacctggacaaaatgcggctgagaaaatgccatgta
gcagttggatctccaggtcgcattaagcagctgattgagattggctttctcccaacggcc
agcataagactgtttgtactggacgaagcagataagttgctggaggaggggagcttccag
gagcagatcaactggatttattcctcgctgccgtcaaataagcagatggtggctttatct
gccacataccccgaatcactggcccatcacttaacgaggtacatgagggatcccagcttc
gtgcgactgaaccccactgatccagcactcattggactgaagcagttctacaaggttgta
aattcctacccgcttccacacaagatctttgaagagaagatgcaacatttactggagttg
ttcagcaagatccccttcaaccaagccctggtcttctctaatcttcacagcagggcccag
cgtctagcagacattctcacctcaaaaggacttcctgcagtctgcatttcaggcagcatg
aaccagaaccagcgacttgaagccatgtctaaactaaaacagttcaaatgccgtgtcctc
atttccactgacctgacttccagaggaattgatgcagagaaagtgaacctggttgttaac
cttgatgtgccccaagactgggagacatacatgcatcgaattggaagagctggccgcttt
ggcactcaaggcttggctgtaacgtattgttgccgtggtgaagaagagaatgagttgggg
ctaatagcccagcgttgcaatcttcagctcctgagtttacctgatccaattccaccagga
ttactggaagagcccattgattgggatgtcgaaatcatcaaggtgcaagagtccacaaat
tcatcccttgcggaaacttcaccacccacagaagttgaacattcagtcactgtgaagcag
cagaatgcagacccagaaccactgacgctgcttcccgtcgaacctaccggaaagcgtttc
acgagcaggaaagttcagaaagcgaggaaggcaccggcagaaaaagagccccaggaagcc
cttggggttgacgttggaagggcacccgaggtcagtatctgccacatacccgacaatgac
atcaaaatgaaagttcagtcaaatctccgagaccctacatcctatgatgggtaccaggca
tcgagtgaacaggcactcatcacacctcaaagtaggaaggctctgcaagaatctcttcca
aaaatcccagccttgacactctttaagaaaagatcaaaacgtggaaagagatcattgaat
tttgtggaaattgtagaagattacgagagcttccttgctgaacggaacaataagccagtg
gaagtagtccgacggtggacgggtttcgctgggaccttgaaggagaaatcgctgaatgaa
gacgaagattcagaaagccgagagctgatgtcccgagagcagaacagtagcctgttttta
agtaatagggacatgatgtgtttgtatacttcccaaaaacgggcaaatccagctgtgttg
gatggccaagactccagtgattccagctccagtgctagctcttcaacacgaagcaggacc
agcagcagagaatcatctacagaagctgaagtgccaatgatcgcacgtgtccatgacgaa
ggcctgtggaggaaaggcacgagccctgtgccggaggattataacaaccagagtgggaga
agccttcctgccttccaaccccattcaggcttcaaaggccgtgcatctcctgatcattcc
tcctattcacattccaaaaggccgcttgagaaagatccaggattaggctttaaaagcacc
tcgcttaaaggctcacttcctcagggcagcaggaaaagatccaagggcgatcccacgtct
ggatcagctgaaacgaccaaagctcccagtgaccaggcggcaggcagtatggaaggcaag
cgtgaattgcccgctgaacctgaatgttctggtgattactggaaggcttactatcgtgcc
tggcgcagttactatgctaccattgggtatccttactatggaagttcaaagagaaattct
aattggctaaatgcttaccagatgaactcagtgtacctgcaggaactgctcaaaccatga
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