Scyliorhinus canicula (smaller spotted catshark): 119978252
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Entry
119978252 CDS
T11175
Name
(RefSeq) AT-rich interactive domain-containing protein 2-like
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119978252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119978252
03021 Transcription machinery [BR:
scau03021
]
119978252
03036 Chromosome and associated proteins [BR:
scau03036
]
119978252
Transcription factors [BR:
scau03000
]
Eukaryotic type
Helix-turn-helix
ARID
119978252
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119978252
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
119978252
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
FOXP-CC
TSTD2_N
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
119978252
NCBI-ProteinID:
XP_038675662
LinkDB
All DBs
Position
15:88310101..88656218
Genome browser
AA seq
1677 aa
AA seq
DB search
MAKTPSKSGGLRTGRSFLDELRHFHRSKGTSFRKIPIIGGRELDLSALYSRVTSLGGFAK
VTDKGLWADLLEEFNFPRGCANAAFALKQYYLRYLESYEKLHHFGEDDEILTPTNSRPQG
VVSGVHLFYNRHQHIIPESVRRGYGLFTEFTTISDYNKVVLSLLSGLPNEVDFAINVCTL
MSHGNKQMLQMEKDPKVVTLLLAHAGIFDDSPGTYLNVYESEWKVKSGRDFIKFWKETVE
DHEVRELIGDKSQKSKVLEAASDDRWDPVLFHPPQKLGINDLEGQRVLQIAVIIHNLSME
EGNAKLLANRTCLRFLLLCAHNRHVSLKQMGLDTLGNVMAEMQLDPIDFQSTQVIFHTIT
KCLYSSDKWFRIRGMEILANLCKIEENVDIICECVEQESYREIVNHLSLQDILLLLASLE
ALYMLSSLGEVTCTKIIKVERSIDQLVCLVSVDMQNFPPDALAAVKLVEQQNTLQQTSDA
SRSATTENISNQSTPVTALRPLGVPSASLLEADSEAFTCQWLNANFEESADSSIYRVDLY
SEYLSLCSKLGSSGILTSTGFTKCLRLTFPNHTIKKIEDAGANGQSQFHVVGIKRRAVPL
PVAAFHQEQQTPNHSSVTIKAGSVPSNSTVNSIAVGMTVPSPALQMHRTLTSTSQPVTQI
LYTTQTQSVTQLPPGISTPIQQHQYCAIASKVPTPIGGIQASGVHPNFHSAVTTVVPGNT
VMQMAATKVTTAVHLPTVTTSVHLPHGAVTPQSLAGQQSVCSTTTVPVLHQTLPNAQFAS
RMHPITNAAIVSQGQLIQPSTAQPVQVHLQYTAATTAVVSAAAVQLPSSQTFTIAGSHNS
VSSQTFQNISPTPLTIVSNSTQLQQQQAQQSVQVIVGHQGQVYPASFHQIVLTNQSGISS
TQLPPPSLVNPSTCGQVLSVQQPPIQVHVQQPSMGGTQSSTGETSVIKQLLLPKPPPHSQ
AGKLLLPIPQVSSSVTRAQSPQVVYQMMANTVPSVGVQTQSQQLVVSQSNLQILQPHGGL
QTVQIIPGQFISTTSPSTILQGPPLNQQVTVTVVPNTNLTNTHVTQLSTNPANSLPGDRS
THVIQSSHVPFNQSNTKVDEFEGEKNVCQKAEDATKLLSSQSQEQTAGLIENSFSGNACN
ASNGHLNGRVDQTGMLLNGETKKENPSSGMNHCGFVESTSAFQESKASSGANLTNGDPIL
EKSGAAEIKNVLKRPLINGDSDFAKGDRSYIGKDIPNEKSIASNHLGNGEILYQEHQDAK
CRLDGESSQPGKMCNGPSSISNVKSHAHTTVIVPNPTVQQAHRNSVLTSGTAAVTFNVTL
PQPHHNGNMVVQSNPIESSQVTTCQSSNTLSASKLSTCEGQQCRQAVKRPGEDAAGVSMA
GIPNKVGVRIMTVSDPTKAGSNTMMVAVPAGATINTATIAGVPKVGSPAPVSIQQTATQH
PQSQVSPAVEQYKGPHSSQVTMSAPEAESVRKPNHSVMCLWKDCKRWFETPSQVFYHAAT
EHGGKDVYQGRCMWEGCEPLPRQRLSFITHLQDKHCSRETLLIGLKRLEQKAQTSTSQTA
VRQSPSDGTAPTPKSHKALVNHPSAALMALRKGSRNLIFRNYLDEKEGPIVKHIRLTSAL
ILKNVARYSELGRMLLKRHENHLSVLAISGMEASTALAKCLYELNSQEQSESTESKR
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaactccgagtaaaagcggcggtttgaggactggcaggagtttcctggatgag
ctgcggcactttcacaggagtaaagggacatcctttagaaaaatcccaataatcggaggg
cgagagttggatttgagtgctttatacagcagagtcacctcactcgggggattcgccaag
gtaacagataagggtctctgggcagatcttttggaggagttcaactttccaagaggctgt
gccaatgcagcttttgctttgaagcaatactacctgaggtacctggagagttacgagaag
ttgcaccattttggtgaggatgatgaaatacttacaccgaccaattctcgaccacagggt
gtagtctctggggttcatttgttttataatcggcatcagcacattattccagaaagtgta
cgtcgaggatatgggctttttacagaatttaccacgatcagcgactataataaagtggtg
ctgtctttactttcgggacttccaaatgaggtggactttgcaatcaacgtttgtacactt
atgtcacacgggaacaaacaaatgctacaaatggaaaaagacccgaaagttgttacactg
ctgcttgcacatgctgggatttttgacgatagtccagggacctacttgaatgtatatgaa
tcagaatggaaagttaaatctggaagggacttcataaagttttggaaagagacagttgaa
gaccacgaagtacgggagcttattggagataaaagtcaaaaatctaaagtcctagaagct
gctagcgatgatcgatgggacccggtcttgttccaccctccacagaaactgggcattaac
gacctagaagggcaacgggtgctgcagatagctgttattatccacaatctgtccatggaa
gaagggaacgccaagctgctagctaaccgaacgtgcctgcggtttctgctgttatgtgct
cataataggcatgtctcacttaagcaaatgggactggacacactggggaatgtaatggca
gagatgcagttggatcccatcgacttccaaagtacccaggtgatttttcacaccattaca
aaatgcctttactcttcagacaagtggtttcgaattcgaggaatggaaatcttggctaat
ctttgtaaaattgaggagaatgtagatattatctgtgagtgtgtggaacaggaatcctat
cgagagattgtgaaccatttgtctctccaagatatcttgctcttactggccagtctggaa
gctctgtatatgctgtcgagcctgggagaggttacctgcaccaagatcatcaaagtggag
agaagtatcgatcagctcgtttgcctcgtgtctgtggacatgcagaactttcctcccgat
gcactagcagcagttaagttagtagaacagcagaacactcttcagcaaacatctgacgcc
agtcggtcagccacaacagagaatatttcaaaccagagcacacctgtaacagcattgagg
cctcttggagtcccctctgccagcctgttggaagcagacagtgaagcatttacatgtcag
tggttgaatgccaattttgaagaaagtgcagatagttcgatctaccgagtagacttatac
tctgagtacctctcactgtgcagtaagcttgggagcagtggcattctaacatccacaggg
ttcaccaagtgtctccgattgacttttcctaatcacacaataaagaagatcgaagatgca
ggtgctaatggtcagtcacaatttcacgtggttgggatcaaacgtagagctgtacctctt
cctgttgcagcatttcaccaagaacagcaaacaccaaatcattcctctgtaacaataaaa
gcaggctctgtgccttccaattcaacggtgaattccattgctgtcggtatgacggtacct
agcccagctcttcaaatgcacagaacccttacatctacaagtcaaccagtgacacaaatc
ctctacacaacccagacccagagtgttacccagcttcctcctggtataagtacccctatt
cagcaacatcaatactgcgctattgcaagcaaggtgcccacacccattggagggatacaa
gcatctggtgttcatccaaattttcattctgcagttacaacggtagttcctgggaatact
gtaatgcaaatggcagcgaccaaagtcactacagcagtgcatctgcccactgtgaccaca
tctgttcatcttcctcatggtgctgttactccccaatcccttgctggtcagcagtctgtc
tgttcaacaacaacagttcctgttctccatcaaacactgcctaatgctcagtttgcttca
cgaatgcacccgattacaaatgctgccatagtctctcaaggacagcttatccaaccttcc
actgcccaacctgtgcaagtgcatcttcaatacacagcagctaccactgctgttgtgtct
gctgctgctgtccaactgccgagcagccagacttttaccatagcaggcagccacaactct
gtttcttcccagacatttcaaaatattagtccaacaccattaactattgtcagcaattcc
acccagcttcaacagcaacaagcccaacaaagtgtccaagtgatagttggacatcaaggt
caagtttaccctgccagttttcatcagattgttctaacaaatcaaagtggaatttcttct
acccagttgcccccaccctccctggtgaaccccagtacctgtgggcaagtgctttctgtt
cagcagcctccaattcaagttcatgttcaacaaccttccatgggaggtactcagtccagt
actggtgaaaccagcgtaattaaacagttactacttcctaaaccaccacctcattcccaa
gcaggtaagctcctacttcctatcccacaagtgtcatcttctgttaccagggctcaaagt
ccgcaagttgtttatcaaatgatggccaatacagtacctagtgttggagttcaaacccag
tctcagcagctggttgtaagtcagtcaaacttgcaaatcctgcagccgcatggaggccta
caaactgtgcagattattccaggccaattcatttctaccaccagccctagcaccattctc
cagggaccacctctgaaccaacaggttactgttactgttgtaccgaatactaatttaacc
aacacacacgtgacccaactaagtacaaatcctgcaaacagtcttcctggagatcgcagt
acccatgttatccagtcgtcacatgtcccattcaaccaaagcaacacgaaagttgacgag
tttgagggagagaaaaacgtttgtcagaaagctgaggatgctacaaaactgcttagttca
caatctcaagaacaaactgctggactgatagaaaattctttctcgggtaatgcttgcaat
gcaagcaatggacacctaaatggaagagttgatcagactgggatgctacttaatggggaa
actaagaaggagaaccccagctcagggatgaatcattgtggttttgtggagagcacatca
gctttccaggaatcgaaagctagcagcggggcaaacttgacaaatggggatccaatttta
gagaaatctggtgcagcagaaattaaaaatgttttaaaaaggcctttgatcaatggggac
tctgattttgctaaaggcgatcgttcatacatagggaaggacattcctaatgagaagtca
atcgcatctaaccatttgggaaatggggaaattctttatcaagagcaccaagatgcaaaa
tgtcgtctggatggtgagagcagtcaaccgggaaaaatgtgcaatggaccttcttcaatt
tccaatgtgaaatcgcatgcacacactacagtaatagtaccaaatcctactgttcagcaa
gcacacaggaactctgtattaacgagtggaactgcagcagtcacttttaatgtaaccttg
cctcagcctcatcataatggaaatatggttgtacagtccaaccctatagaatcttctcaa
gtgaccacatgtcagagcagcaacacactttctgcttcaaagctttccacctgtgaaggt
cagcaatgtcgacaagccgtcaaaaggcctggtgaagatgcagctggtgtttccatggca
ggtatcccaaataaagtaggggtgagaattatgactgttagtgaccctacaaaagctggt
agcaacaccatgatggtggctgtccctgctggtgccaccattaatacagcaacaatagca
ggggttcctaaagtgggttctcctgctccagtgtccattcagcagacagcaacccaacac
ccgcagtcgcaggtttccccagcagtggagcagtacaaaggtccccacagctcccaggtg
acgatgtctgctccagaagctgagtctgtcaggaaacccaaccacagcgtaatgtgtctt
tggaaagattgtaagaggtggtttgagacaccatcccaggtgttttatcatgcagctact
gagcatggtggaaaggatgtgtaccaaggtcgatgtatgtgggagggctgtgagccactt
cctcgacaaaggctatcattcatcacacacctgcaggacaagcactgctcaagggagacg
ctgcttatcggactgaagaggttggagcagaaagcacaaacgagcacctcccaaactgca
gtaaggcagtctccatcagatggtacagctccaacacccaaatctcacaaggccttggtc
aatcaccccagcgctgctctaatggctctaaggaaaggttcccgcaaccttatttttagg
aattacttggatgagaaggaagggccgattgtgaagcatattcgtttgacttctgcctta
attttgaagaatgttgctagatactccgagcttgggcgaatgttgctgaagcggcatgag
aaccacctatctgtactggccatcagtggtatggaggcttccacagcactagcaaaatgc
ctttatgaactcaactcgcaagaacaatcagagtcaacagaaagcaaacgctga
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