Scyliorhinus canicula (smaller spotted catshark): 119978285
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Entry
119978285 CDS
T11175
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
scau01002
]
119978285 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scau04121
]
119978285 (usp42)
Enzymes [BR:
scau01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
119978285 (usp42)
Peptidases and inhibitors [BR:
scau01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
119978285 (usp42)
Ubiquitin system [BR:
scau04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
119978285 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
119978285
NCBI-ProteinID:
XP_038675714
LinkDB
All DBs
Position
15:24751513..24857843
Genome browser
AA seq
1438 aa
AA seq
DB search
MMTIVDKVIEASNTAACKNQPCSSVASFSGIVKEKNMESGAASWGATSPITEVPKNKLLG
PMPGTALYTNAVTLQEKPKQPVQKDQNILGSGDGIAPPQKILFPAEKISLKWQQMHKIGA
GLQNLGNTCFLNSALQCLTYTPPLANYMLSREHSRTCNEQGFCMMCMMQNHITQVFSSSG
NVIKPMSVINDLRRIAKHFRFGNQEDAHEFLRYTVDALQKACLNGSNKLDRQTQATTMIC
QIFGGYLRSRVKCLNCKGVSDTYDPYLDIALEIKTAPNITKALEQFVKPEQLDGENAYKC
TKCKKMVPASKRFTIHRASNVLTLSLKRFANFTGGKITKEVRYSEYLDVRPYMSQSNGEP
VVYVLYAVLVHSGFSCHAGHYYCYIKASNGQWYQMNDSIVSSSDIRSVLNQQAYVLFYIR
SYDSKNSSEHSNHPGQSSPRPPVNQRLTTNQTMSGFIGPQLPPHRTKNSNHLINGNCSQK
EVASSAAPSTSGIRTISTPPGPSPSRSLPRPSVIPESSKRQKLSFSIQPSKQGARQAQTQ
TNLHCSPLENLYKTPSSVSHTNMSPSTSGTSATGSPPSAPTATAVTAAQPVASNTASSHL
MVNGQCKGSSSSLVPYNEESSEDSDEEPKGLIKENGYVKTVNGVINGTRPSTHLKLNSVS
VATSDSSHSENLPEGVATKTDVLREAGDCGKNHQPCESTGTRVQPVNCSANGLSTTKGSP
DEASTVPLNPNTENITPISTSSIKKEEQDLEEARGNQHHFLMFSEASSAINHSGGGGDAD
TVHAYMADKRASLPISPLREATDGPSTSSTVNPFKSNGDLQRNIAECHLANSSSNNQCTL
QKVQAIPEITDIENQTHEKLRPSQIKEAVQTDDHKTNGHVFENKQSGQDLANKIEEIENH
SNKSQSNSNQESILENESRPSKEYSYKGISNQDENCSAGNDDHYTKKNLSDGGTNNQDKN
WVVEESSQLVNKDQPPEEKEPNQAVQQISEQQPTNGAESPVKESSNCNKNSISEQDITYK
EVILSPSTVMAGPEENQVQKKENSVTVHAKSRSRERTSAEKYHILQKDNYKGESNYRHRS
REHKDRKLYQNEKEFEKSASCSYKNCSHKQDYYQDGRIDKYRRENECSTDRQNYSNSKAG
SLLAHHTSQDRFYREKHNSNGRTWSYQFEHNGLEHKSERKRKRSDSENGESDVERKCNKL
LRDRSSEERRMKKHKKSKKKKTSKDKYRNRDHRQQPLDMSQVSSDIDERKHRKKKKKKKK
KRHHSDKESHYQKEHHHSRKHQSTRSANGSNKWEQLSEPIRIVCSEDKMMHGCKPSCDDQ
MSQKAGLAHLDSKLNGPHIHIKEETVNEHNGNLNRHLSDCVGSGSLSDWSRQKLENGSDS
HKPYSKFNKEHLQEKHFSHDYKEYGPMDNRNDLTSVGSFRATTRWKTGEKRCEEQKAH
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatagttgacaaagtaatagaggcctcgaacactgcagcttgcaagaaccaa
ccctgcagctccgtggcatctttctctggaattgtgaaagagaagaacatggagtcaggg
gcagcaagttggggtgcaacatccccaattacggaggtaccaaagaacaaactcttagga
cctatgcctggaactgctttgtacaccaatgcagtgactctacaagagaaaccgaagcaa
ccagtgcaaaaagatcaaaatatacttggcagtggtgatggaatagcacctccacagaaa
atactttttccagcagagaaaatctccttgaaatggcaacagatgcacaaaataggagct
ggcctccaaaacctgggcaacacctgctttctaaactctgcactgcagtgtttgacctat
acgccaccccttgcaaactatatgctttcccgggaacattctagaacatgtaatgaacaa
ggattctgtatgatgtgtatgatgcagaatcatatcacccaggtcttttccagttctgga
aatgttatcaagcctatgtccgtcattaacgacctcagacgaatagcaaaacatttccga
tttggaaaccaggaagatgcacacgaattcttgcgttacactgttgatgctctccagaaa
gcatgcctaaatggaagcaacaaattggatagacaaacacaggcaaccacaatgatatgt
caaatatttggagggtacctgaggtcaagagtaaaatgtttaaactgcaaaggagtgtct
gacacatatgatccatacttggatattgctttggaaataaagactgcaccaaacatcaca
aaagctctggaacagtttgtaaagcctgagcagctggatggtgaaaatgcttacaaatgc
accaagtgcaagaaaatggtgcctgcctcaaagagattcaccatccatcgagcttcaaat
gtactgacactctctctgaagcgttttgcaaactttacaggtggaaagattacaaaggaa
gtgaggtactctgagtatctggatgttcggccctatatgtcgcagtcaaatggagagcca
gttgtgtatgtgctttatgcagtattggtacactccggattcagctgccatgctggacat
tactactgttatatcaaggccagtaatggacagtggtaccagatgaatgattctattgta
tcttcaagtgacatcagatcagtgctaaaccaacaggcctatgtgctcttttacatcaga
tcctatgactcaaaaaatagctcagaacattctaatcaccctggccagtcatctccaagg
ccacccgtcaatcaacgattgactaccaatcaaaccatgtctggttttattggaccacag
ctccctccacacaggaccaagaactcaaatcacttaataaatggaaactgctcacaaaaa
gaagtcgccagcagcgcagcacccagtacaagtggaatcaggaccatttctactccgcct
ggaccctctccgagcaggtcattgcccagaccaagtgtgatacctgaatcttccaaaagg
caaaaactttccttcagtatacaaccttccaagcaaggggcaaggcaagctcagacccag
accaacctccattgtagtccgttggagaacttgtataaaactccatccagtgtttcccat
actaacatgtctccatctacctcaggaacctcagccacaggatccccaccctctgctcca
actgctacagccgtcacagctgctcagccagtagcatccaacactgcctcatctcactta
atggttaatggtcagtgcaaaggatcttccagttctttggttccttataatgaggagtct
tcagaggactctgatgaagagcctaaaggcttgattaaggaaaatggttatgtgaagact
gtgaatggagtgattaatggaactagacccagtacacatctcaaattaaactctgtgtct
gtagccaccagtgacagttcccactctgagaatctgcctgagggagttgcaacaaaaact
gatgtgcttagggaagcgggcgactgtggcaagaatcatcagccctgtgaatccactggt
actcgggtgcagcctgtgaattgttctgcaaatggtttatcaactacaaagggatcacca
gatgaagctagtactgttcctctgaatccaaacactgaaaacataacgccaatctctaca
agcagtataaagaaagaagagcaagatttagaagaagccaggggaaatcagcaccacttt
ctaatgttttcagaggccagttctgcaataaatcacagtggtgggggtggtgatgcagac
accgtccatgcatacatggctgacaaacgagcaagcttaccgatctcgccactaagagaa
gccacagatgggccatccacatcatccacagttaatccttttaaaagcaacggtgatctt
cagagaaatattgccgaatgccatcttgctaacagcagttccaataaccagtgtaccctc
cagaaagtacaagcaatcccagaaattactgacattgagaaccagactcatgaaaaatta
agacccagtcagatcaaagaagcggtacagacagatgaccacaaaaccaatggtcatgtt
tttgaaaataaacaatctggtcaagatctagccaataagattgaagaaattgaaaatcac
agtaataaatctcaatctaatagcaaccaggaaagtatcttggaaaatgaaagtcggcct
agtaaggaatactcttacaagggaatatctaatcaagatgaaaactgttcagcaggaaac
gatgatcattacaccaaaaaaaatctgtctgacgggggaacaaataatcaagacaagaat
tgggtagttgaagaaagtagtcaacttgtcaataaagatcagcctccagaagagaaggaa
ccaaatcaagctgtacagcaaatatcagagcagcaaccaacaaatggagcggaatctcct
gttaaggaaagttcaaattgtaataagaacagcatttcagaacaggacatcacttacaaa
gaagtgatcctgtctccaagcacggttatggctggtccagaagaaaaccaggttcagaag
aaggagaactccgttacagttcatgcaaaatctcgaagtagggaaaggactagtgcagaa
aagtatcacattttgcaaaaggataattataaaggtgaatccaattataggcatagatcg
agggagcacaaagatagaaaattgtatcaaaatgaaaaggagtttgaaaaatcagcgagt
tgtagttacaagaactgttcccacaagcaggactattatcaagatgggagaattgataaa
tatagaagagaaaatgagtgttcaactgacagacaaaactacagtaattccaaggcagga
tcattgctggctcaccatacttctcaggataggttttacagagagaaacacaattcgaat
ggaaggacttggagctatcagtttgaacataatggactggaacacaaatctgagcgcaaa
agaaaacgcagtgacagcgagaatggcgaaagtgatgttgaaaggaaatgcaataaactg
ttgcgggatcgatcgtctgaggagaggagaatgaaaaagcataagaaatcaaagaagaaa
aagacatcaaaagacaaatacagaaatagagaccataggcaacaaccgttggatatgtca
caggtgagctctgatatcgatgaaagaaaacacaggaaaaagaagaagaaaaagaagaag
aaacggcatcacagtgacaaagagagccattaccaaaaagagcatcatcattccaggaaa
caccagagcacgaggtcagctaacggcagtaacaaatgggaacagttgtctgagccaatt
cgaattgtctgctctgaagataagatgatgcatggatgtaaaccatcatgtgatgatcaa
atgtcacagaaagcagggcttgcacatttggacagtaagctcaatggtccccatatccat
atcaaagaggaaacagtaaatgagcacaatggcaatttaaacagacatctttcagactgt
gttggatcaggatctctttctgactggtctaggcagaagttggaaaatggcagtgattca
cacaaaccttattcaaaatttaataaagaacacttacaagaaaagcacttttcgcatgat
tacaaagaatatggtccaatggacaacaggaatgacttgaccagtgttggttcttttagg
gctactacaaggtggaagactggagaaaagagatgtgaagagcagaaagcccactaa
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