Scyliorhinus canicula (smaller spotted catshark): 119978472
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Entry
119978472 CDS
T11175
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119978472 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119978472 (cpsf4)
03019 Messenger RNA biogenesis [BR:
scau03019
]
119978472 (cpsf4)
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119978472 (cpsf4)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119978472 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCHC
zf-CCCH_4
zf-C3H1
zf-CCHC_3
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
119978472
NCBI-ProteinID:
XP_038676060
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Position
15:complement(61622182..61643095)
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AA seq
273 aa
AA seq
DB search
MQELISNVEHIRFELEMAVEQQLGAQPLPFPGMDKSGAAVCEYFLRASCGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTGVDQP
PLLQQQQQILQKQNLAPFLQRSSSLVQIPSANILVGQQKSIPQSCGPMQQSQFQPMSNRG
PRPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctcatttccaatgtggagcacatcaggttcgagctggagatggcggtggag
cagcagctcggagcgcagccgctgcctttccccggcatggacaagtctggggcagcggtc
tgtgaatactttctgagggcatcatgtggaaagggtgggatgtgcccctttcgccacatc
agtggtgagaagacggtggtgtgcaaacactggctgagggggctctgcaagaaaggagat
cagtgtgaattcttacacgagtatgacatgaccaagatgcccgagtgctacttctattcc
aagtttggtgaatgtagtaacaaggaatgtccgtttctacacattgatcctgagtccaaa
atcaaagactgcccctggtacgaccgagggttttgtaaacatggccctctgtgcagacac
cgacacacacggcgagttatctgtgtaaattatttggtaggattctgccccgagggcccc
agctgtaaatttatgcatcctcgatttgagctgccaatgggtactggcgttgaccaaccg
ccattactacaacaacagcaacaaatactccaaaagcaaaatcttgccccgtttcttcag
cgatcatcctctctggtacagattcccagtgccaatattctcgttggacagcagaagtca
attccacaatcttgtggaccaatgcagcaatcccagtttcagccaatgtcaaatcggggc
cctagacctttggaacaagtcacatgttataagtgtggtgaaaaaggacattatgctaac
cgatgtaccaaaggacacctggcatttcttagcggtcagtag
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