Scyliorhinus canicula (smaller spotted catshark): 119978843
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Entry
119978843 CDS
T11175
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
scau03037
]
119978843 (ift140)
Cilium and associated proteins [BR:
scau03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
119978843 (ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
Beta-prop_WDR19_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
TPR_COPA_B
TPR_14
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
TPR_GEMI5
Beta-prop_EML
Clathrin
TPR_IFT80_172
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
PPR_2
tRNA_int_end_N2
VPS8_N
Motif
Other DBs
NCBI-GeneID:
119978843
NCBI-ProteinID:
XP_038676659
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Position
15:complement(28725673..28900098)
Genome browser
AA seq
1471 aa
AA seq
DB search
MAVYFDHRIDAPDTVGTPSEIAWHRIHPLLAVAFVSTSSTPGGSVDVYLEQGEHIPNAHI
EHPFQPTFISWHPCKRVIAIGWETGAVIFWSEQGVDEQQIAAGIHRAPITILEWSSNGTR
LVTADKAGVLMVWRVDQHGRVQGSPLGKQDYGKQLTHCIFKPPAPGEDLVQLAKAAVSGD
ENALDMFNWRKVGKGDAPFKVGLQQGITCFVSVTDGTVYHVGEKGKSLQVLRIDGPIRKL
MYMEQKEILMVVTEALFLSQHSIGLDGTSQELMKVKLSGKAGQKADIVWVESGLLITATG
EVVIRLWDLDKDENYTLTLDEHLGFGTGEIINCISYCESKGIIAAGTSKGQVALWRKTVV
NSLSGCKIDGKDQWKLQAPIDLEGNIIQIKWGSSKNLLSVISAGTVLILNEQVMSAHFNQ
QVAAMQVAPNQLNLTFFSSGNQQMLRTDMHVKGVYVTKETVAVWNGKHTTVFEPFGPSLR
NAGSFPCDSCVLAVHEESIYTVEPNRVQVRTLQGTVKQLLVFNETEGNPCHLHICGNFLV
VGTDTSHLKVFDLSRREAKPHCNAKNLVEHVPNLGGITSVKCSSNGNNVSILINRLNGTP
DSRAFFYDVEMDTLNYFDFETGRPSSESCSMPRVDEGEMEKERPEMNELLGRYPSNHFWD
QNEPRLFVCEALLAVSTPKQSKLPANTEANYSEYQVNAVVVSFFITQEHGLLLQDSFPKA
VTHEALMGLEVPYYYFSKKSGETKNDSEPMPGSSSIAQMVAKRPLRDFVGLEDCDKTTRD
AMLNFSFYLTIGDMDEAFKSIKLIKSEAVWENMARMCVKTRRLDVAKVCLGNMGHARGAR
ALREAEHEPELDARVAMLAVQLGMLEDAERLYRNCKRFDLLTKFYQASGQWQKAIENAEG
FDRVHLRTTYYNYAKHLEALGDHHLALSHYEKSDTHRFEVPRMLLEDLQTLEIYVNKTKD
KSLWKWWAQYLESQADMDSALKYYEKAQDYLSLVRVHCYLGNIQKASEIANETGNHAASY
HLARQYEARDDVKQAIHFYTRAQAYNNAIRLCKDSGLDDHLMNLSLLSSPEDMMEAARYY
EEKGLQMDRAVMLYHKGGHFSKAIELAFATQQFNALQLIAEELDENSDPALLSRCSDFLI
EHKQFEKAVELLVTAKKYYEALHLCLEQNLTITEEMAEKMTVSKDSKELSEDFRRDLLER
IADCCMRQGNYHLATKKYTQAGNKSKAMRALLKSGDTEKIIFFTGVSRQKEIYIMAANYL
QSLDWRKDPEIMKNIISFYTKGRALDLLAGFYDACAQVEIDEYQNYEKALGALTEAYKCL
SKAKMRSQSELEERLGQLQNKLTMVKKFVQIRRLYEEDPKEALNQCENLLGEPELDQTVR
TGDVYALLIEHHAQQGSFEVAYKYMEEMTKKLPSVNVTYYVNQQITDAIYKAVGVPLKTN
VVVEKVRHNSAEDGDEVEEDVAEDSYNGPED
NT seq
4416 nt
NT seq
+upstream
nt +downstream
nt
atggcagtttactttgatcatcgcattgatgcacctgacactgtgggtacaccatcagag
attgcttggcatcgtatccaccccttgttggcagtagcctttgtcagcaccagtagcact
ccagggggtagtgtggatgtctatcttgagcagggagaacacatacccaatgcacacatt
gagcatcccttccaaccaacgttcatcagttggcatccgtgcaaaagggttatagctatt
ggttgggaaactggagcagtgatattttggtctgagcagggtgtggatgaacaacagatc
gcagctggcatacaccgagctccgatcaccatcttggaatggagcagcaatggcacacgg
ctggtcactgctgataaggctggagttctgatggtgtggcgggtggatcagcatgggcga
gtgcaaggatcaccacttggtaaacaagattatggcaagcaactgacccactgtatcttc
aaacctcctgccccaggagaggacctcgtacagttggctaaagctgcagtaagtggggat
gaaaatgctttggatatgttcaattggagaaaggttggaaaaggagacgcaccatttaaa
gttggacttcagcaaggaatcacatgttttgtcagtgtaacagatggtactgtgtaccac
gttggtgaaaaagggaagagcttacaggtcctccgcattgatggaccaatcaggaaactc
atgtacatggagcagaaggaaatcctaatggttgtgactgaagcactttttctatctcag
cacagtattggtcttgatggaacaagtcaagagcttatgaaggtaaagctgagcggaaaa
gcaggccaaaaagctgatattgtctgggtggagagtggccttctcattacagcaacaggc
gaggtagttattaggctctgggatttggataaagatgagaattacactctgacactagat
gaacacctggggtttggcactggagaaatcataaattgcatctcatactgtgaaagtaaa
ggtatcatagcagctggcaccagtaagggacaggttgctttatggcgaaagactgtggtc
aacagtttgagtggttgcaaaatagatggaaaagaccaatggaaactgcaagctccaatt
gatcttgaaggaaatatcatacagatcaagtggggctccagtaaaaatcttctgtctgtg
atcagtgctggcacggtccttatcctcaatgagcaggtgatgtctgctcatttcaaccaa
caagtagcagccatgcaggtggctcccaaccaactgaaccttactttcttctcctctgga
aaccagcagatgctccgtacagacatgcatgttaaaggggtgtatgtcaccaaggaaaca
gtagcagtatggaatggaaaacacacaaccgtttttgaaccatttgggccatcactgaga
aatgcaggctcgtttccctgtgattcttgtgttttggctgtccatgaagagagcatttac
actgttgagccaaaccgtgtgcaggtccgcaccctgcagggtacagtcaagcagctgctt
gtgttcaatgagacagagggaaacccatgtcaccttcacatctgtggaaacttcctggtc
gtagggacggacacatcacatttgaaggtcttcgatctttcccgcagggaagcaaagcct
cactgtaatgctaaaaacctggtagagcatgtccccaatctggggggtattacatctgtg
aagtgcagctccaatggtaataacgtcagcattctcatcaacaggctgaatggaactcca
gactccagggccttcttttatgatgtggagatggacactttgaattactttgactttgaa
accgggcgaccaagcagtgaaagctgttctatgcctcgtgtggatgagggtgagatggaa
aaggagcgtccagagatgaacgaactgctgggacgatatccaagcaaccatttctgggac
cagaacgaacccagactttttgtgtgcgaggctcttctggcggtttcaaccccaaagcag
tcaaagttgcctgcaaacaccgaagccaattattcagagtaccaggtgaatgctgtggtg
gtatcattcttcatcacacaggaacatggcctcctgttgcaggacagtttccccaaggca
gtgacccatgaggccttgatggggctggaggttccctattattatttctccaagaagtca
ggagagaccaagaatgactctgagccaatgccaggctcttcttccattgcacagatggta
gcaaagaggcccctgcgagattttgttgggctggaagattgtgacaagacaacacgtgat
gctatgctgaatttcagcttttatttaactataggggacatggacgaggcttttaaatca
attaaactcatcaagagtgaggcagtatgggagaatatggccaggatgtgtgtgaaaaca
cggcggttggatgtggccaaggtatgtctggggaacatgggccatgccagaggagccaga
gccctacgggaggctgaacacgagccagaactagatgcgagagtggccatgctggcagta
cagttgggaatgctggaggacgcagagaggctttacagaaactgtaagcggtttgatctc
cttaccaagttttatcaggcctcaggacagtggcagaaggccattgaaaatgctgaggga
tttgaccgggtccatctcagaaccacatactacaattacgccaaacacctggaagctctt
ggggatcatcacctggcactcagccactatgaaaagtcagacacacaccgatttgaggta
ccaaggatgctcctagaagatctacaaacacttgaaatatatgtcaacaaaacaaaggac
aagagcttatggaaatggtgggcccaatacttggaaagtcaagcagacatggactcggct
ttgaaatattatgagaaggcacaagactacctctcccttgtccgtgttcattgttacctt
ggcaatatacaaaaggcctctgaaattgccaatgaaacagggaaccatgcagcctcttat
cacctggcccgtcagtatgaagctcgggatgatgttaaacaggccattcacttctacacc
cgtgcacaggcctacaataatgcaattcgcctctgcaaggacagtggccttgatgatcat
ctgatgaacttgtctctcctgagctccccagaggacatgatggaagcagcccgctactac
gaggagaaggggctccaaatggaccgtgctgtgatgctctatcataagggtggtcacttt
tccaaagccattgaattggcctttgctacgcagcagtttaatgctttgcaactcatagcc
gaggagctggacgagaattcagaccctgccctgttgtctcggtgttctgacttcttaatt
gagcacaagcagtttgaaaaggcagtggaactgttggttactgcaaagaagtactatgag
gccctccatctctgtttggagcagaatctgaccatcacagaggaaatggcggagaaaatg
acagtgtctaaggattcgaaggaactctctgaagatttccgccgtgacctgcttgaacgt
attgctgactgctgcatgcggcagggaaactaccaccttgcaacaaaaaagtacacacag
gctggaaacaagtccaaggcaatgagagcgcttctgaaatcaggagacaccgaaaagatt
attttctttactggagtatctcgacaaaaggagatttacatcatggcagcaaactacctt
cagtccttggactggcggaaagatcctgaaattatgaaaaatataatcagcttctacact
aagggacgagcactggatttgcttgctggcttttacgacgcctgtgcacaggttgagatt
gatgaataccagaactatgagaaagcattaggagctctgactgaggcatacaaatgtttg
tccaaagcgaagatgaggagtcaaagtgaattggaggaacggctgggacagctgcagaac
aagctgacaatggtgaagaaatttgtgcagatccgaaggctttatgaagaggatccaaag
gaagccttaaaccagtgtgaaaatctactgggggagccagaactcgaccagactgttcga
accggcgatgtctatgcactcttgatagaacatcatgcacaacaggggagttttgaggtg
gcctataagtacatggaagagatgaccaagaaattgccctctgtcaatgtaacctactac
gtcaaccagcaaattactgatgccatttacaaggccgtgggtgttccactaaagaccaat
gtagtagtcgaaaaggttcgacacaacagtgcggaggatggagatgaagtggaagaagat
gtagctgaggattcttataatggaccggaggactga
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integrated database retrieval system
