Scyliorhinus canicula (smaller spotted catshark): 119978861
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Entry
119978861 CDS
T11175
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
scau01001
]
119978861 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
scau04054
]
119978861 (ciita)
Enzymes [BR:
scau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
119978861 (ciita)
Protein kinases [BR:
scau01001
]
Serine/threonine kinases: Other
TAF1 family
119978861 (ciita)
Pattern recognition receptors [BR:
scau04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119978861 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
NB-ARC
LRR_14
CARD
AAA
AAA_16
nSTAND_NTPase5
nSTAND3
RNA_helicase
nSTAND6
Motif
Other DBs
NCBI-GeneID:
119978861
NCBI-ProteinID:
XP_038676691
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All DBs
Position
15:complement(10597213..10730003)
Genome browser
AA seq
1334 aa
AA seq
DB search
MIHSRKSLLGLISELSKAPPSKFQVLLSDLLEKGLLTKDGYRHYNQCEPEDLSRTILVSV
LGKEESYCQAFLSLLCNHFPWICGVAVSNDKDQTWGNGQTDTDMRNQSCAKKPPSLRDHS
YLALLQEEQCSTQMALASTCLQNGEATCGTGFDSDLYSELLDDLSKLDQSCEPDDCGIEG
ILKYLLDPRPLNAVGLEQYFDEEMLLETQEMTVRSAPLHNAVSAGNCACSAADETTCQVS
VVPADIKAKSRKRAADGDYPRGQEITSQDSAHFMDVTRAKCLRRGEENQPPSPEHSSQTP
TTYPLGVNHLKELKNHVAQIGSIASSQSANSSDLAVNGPVVSSAAVQLFPSYPLPRQVVN
VSVNGMVQQGTSACILVVNKTLGTLEITSLVPTSPVHSPSHSTWDGSPQNVPVTPWNASS
VSSCTDSPVSPVDSPTTAGSASPQSSDSQRSPESTTNAHPMDSPMATGSEDSEGPYPGTD
SSGEEPSEPLSPTIKIHTKTKGVEAGTETVKEYLKDMSQHSYICHEYDEMLLEDIYVDLT
MIKGQAENKSAKNATKCLDKECRIYDIAERERGAVNMGNLFDIPGKRQRETRIVALLGRA
GIGKSAFVQKICHDWVNGHLGQFEFVFWFKCRTLNFAKQYTLKDLLFQPFLPSLRNTDEV
FQYLWHNPRKVLLIFDDFEDFQDHDGLAQHTACGTGEQAHTVKQLLAGLLQKKLLKGCTL
LITARPKETFNQYLGRVDKIVEVLGFSPSHIRKFLHRYFEDSSLAAEVMACLQEHPYLFS
FCYIPLLCRFICFVLKATHRTGGGRLALPSTLTNLFLSIFQILLHREPPTILQTQNAIAL
HKQSILELSKRAFTGVQRHQCVCADSGSAEMSNFALKHGLLRPFLMTGAGKEQECGKTFS
HSSLQNFLGGLYLLCSEDIKCKGLMKMISLEHKKRKSQEDWLDIVRRFLVGMAFQDGNTF
LRCFSHHSKANTKSKKQKNLQKYLMELEVSTLSTSKLLELCHCVYETQSPELTAQIASKL
SERLSFRGTRLTPPDIFVLLHVMHKTPSNFAVDLRDTSIDLQGIKQFVELKNVTSFRVSV
CDAINLWEHLEQSELLELLHLSLLKFSVNPFEIKSLKDIEDLDLLVRIHQDRRFLSSTHN
LSGGELFELPAVRTLQTLEFALGPVNGPLGFRKLTKILPALAFLKYLDLEGSSSQKDKMT
ENKIGDEGAERLADVLSNLTSLEKLILSRNQIADRGAQELARSLPNLKSLKTLSLYDNII
GDTGAEKLAEILPVMKSLKGLDVKFNKITDVGAQRLTQSLKNCPHIETIWLWSPTITHWM
SEHIKQIDVRINLQ
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgattcactccagaaaatccctgctcggattgatcagtgaactttcaaaagcacctcct
tcgaaattccaagtcttattgagcgacttgctggaaaagggcctcttgacaaaggacggc
taccgacattataaccaatgtgagcccgaggacctgtcgcggaccatcctggtatctgtt
cttggcaaagaggaaagttactgtcaagcattcctctccctcctctgcaaccattttcca
tggatttgtggagtagcagtctccaatgacaaggatcaaacgtggggaaatggacaaaca
gacacagacatgagaaaccaaagctgtgccaaaaagccaccatcgctgagagaccacagc
tacttggctctgctacaggaggaacagtgctcaacacaaatggctctggccagcacctgc
cttcagaacggagaagcaacttgtggaacaggctttgatagtgacctgtactcagaactt
ttggacgacctgagcaaactggatcaaagttgtgaaccagatgactgtggtattgaagga
attttaaagtatttgctggatccacggccgctaaacgcagtgggactggagcaatatttt
gatgaggaaatgttgcttgaaacacaagaaatgacagtcagaagtgctccactgcataac
gctgtttcagcaggcaactgcgcatgttccgcagctgacgaaactacttgccaggtgtcc
gttgtcccagctgacataaaagcaaaaagcagaaagagagctgctgacggggattatccg
aggggacaggaaattacttctcaggattctgcgcatttcatggatgtgacgagagcgaag
tgtttaagaagaggtgaagagaaccaacctccttctccagaacattcctcccagacacca
acaacctaccctttaggcgtcaaccatctgaaggaactgaaaaatcacgtcgcacagatt
ggatcaattgcttcctctcagtcagccaacagcagtgacttggccgttaacggcccggtt
gtcagctctgctgccgtccagctttttccgtcatacccgcttccacggcaagtcgtcaac
gtgtctgtcaatggaatggtgcagcagggaacctccgcctgcattttagttgtaaacaag
accttaggaactcttgagattacatcactggtgccaacatcacctgtgcattccccatct
cattcaacgtgggatggttctccccagaatgttcccgtgacaccgtggaacgcctcatct
gttagttcgtgcacagattctcctgtcagtcccgtggacagtccaactactgcaggctct
gccagtcctcaatccagcgacagtcagagatcgccagagtccacgaccaatgctcaccct
atggatagtccaatggctacaggctcggaggacagtgaagggccatatcctggcacagac
tcatctggtgaggaaccatcggaaccattgagtccaacaatcaagatacataccaaaaca
aaaggcgtggaagctggtacagaaacggtgaaagaatatttgaaagacatgagccaacac
tcttacatttgccatgagtatgacgagatgcttctcgaagacatttacgtggatctcaca
atgatcaagggtcaagctgaaaataagtctgccaaaaacgcgaccaagtgcctggataag
gaatgccgaatctatgatatagcagagagagaaagaggtgctgtgaacatgggcaatctc
ttcgacatcccaggaaaacgccagagagaaacaagaattgttgctttactgggtagagcg
ggtattggtaaaagtgcgttcgtccaaaagatctgccacgactgggtgaacgggcacctt
ggacagtttgagtttgtcttctggtttaagtgcaggacgctgaactttgcgaagcagtac
actttaaaggatttacttttccagccattcctcccctcgttgaggaacaccgatgaagtc
tttcagtatctttggcacaatccgcgcaaggttctgctcatttttgacgactttgaagac
ttccaggaccatgatggcctggcgcagcacacagcgtgcggtacgggtgagcaggctcac
acggtcaaacagctgcttgctggcctcctccagaaaaagctgctgaagggatgcactttg
cttattactgcaagaccgaaagaaaccttcaaccagtaccttggcagagtggacaagatt
gtggaggttttgggcttcagcccaagccacatacgaaaattcctgcacagatactttgaa
gattcatccttagctgctgaagtgatggcatgtctccaggagcatccgtacctgttcagc
ttctgctacatccctttgctgtgcagatttatctgttttgttctcaaagccactcatcgg
actggaggcgggcgtttggcactgccgtccactctcactaatttatttctcagcatattt
caaatcctactccaccgcgaaccaccgactattctgcagactcaaaacgccattgctctg
cacaagcagagcatcctggagttgagcaaacgagccttcacgggggtccaacgccaccaa
tgtgtgtgcgcagactccgggtcggcggaaatgtcgaactttgccttgaagcacggtctc
ctcagacctttcttgatgactggcgcggggaaagagcaggagtgtgggaaaaccttctcc
cattcttccctgcagaacttcctgggtggcttgtatttattgtgttccgaagacatcaaa
tgcaaaggattgatgaaaatgatttccctggagcacaagaagcggaaatctcaggaggac
tggctggacattgttcgccggttcctggtgggaatggcctttcaggatggaaatacattt
ctccgctgtttctctcaccactcaaaggcgaacacgaaaagcaagaagcagaagaacctg
cagaaatacttgatggagctcgaagtcagcacgctcagcacaagtaaattgttggagctc
tgtcactgtgtttatgaaacacagagtccagagctgaccgcacagattgcctcgaaactg
agcgagaggttgtcctttagaggcacgcggctgacaccacctgacatcttcgtactactg
catgtgatgcacaagaccccgagtaactttgccgttgacctgagggacaccagtattgac
ttgcaaggaatcaaacagtttgtggagttgaaaaatgtgacctcatttagggtgtcagtg
tgcgatgctataaacctttgggaacatttggagcaaagtgagttacttgagctgcttcac
ctgtctcttcttaagttttcggtcaatccttttgagatcaagagtttgaaagatatcgaa
gaccttgatttactggtacgaattcaccaagatagaagattcctttcaagcacacacaac
ttatctggaggcgaactctttgagttacctgctgtcaggacactacaaacgctggagttt
gccctcggccctgtcaatggacctctgggatttcgaaaactaaccaagattctcccagct
ctggcatttttgaagtacctggacctggaaggatcaagctcgcagaaagataaaatgact
gaaaataaaataggagatgaaggagccgagaggttggcggacgtgttgtccaatttaacg
tcactggaaaagttgatattatcgcgcaaccagatagcagaccgaggagcgcaggagctg
gctagatcgcttcctaatctgaaatccttgaagacactgagtctctatgacaacattatt
ggtgatacaggagcagaaaaactagcagaaatactcccagtaatgaaatcactgaaaggt
ctggatgttaaattcaataaaatcacagatgttggagcccagaggttgacccagagctta
aagaattgcccccatattgagacaatatggctgtggagccctacaattacacactggatg
tctgaacacattaaacagattgacgtcagaattaatttacaatag
DBGET
integrated database retrieval system
