Scyliorhinus canicula (smaller spotted catshark): 119978926
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Entry
119978926 CDS
T11175
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scau04121
]
119978926 (rbbp6)
Enzymes [BR:
scau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119978926 (rbbp6)
Ubiquitin system [BR:
scau04121
]
Ubiquitin ligases (E3)
U-box type E3
119978926 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-CCHC
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
119978926
NCBI-ProteinID:
XP_038676785
LinkDB
All DBs
Position
15:complement(42530844..42584749)
Genome browser
AA seq
1823 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHISLSDLKKTIMAREKLKAADCDLQITNAQTKEEYTDD
NALIPKNSSVIIKRIPIGGVKSAGKTFVIDRSEPASGTSKAFYPFAHGGNRGRQEKEVTD
LVTRLQGKLSEIDDSGTSISLAQLTKTANLAEANASEEDKIKAMMTQSGQEYDPVNYMKK
PLGPPPPSYTCFRCGKPGHYIKNCPTNGDKNFEAVPRIKKSTGIPRSFMVEVDDPNMRGA
MLTNTGKYAIPTIDAEAYAQGKKEKPPFLPEEPSSSSEEEDPIPDELLCLICKDLMMDAV
VIPCCGNSYCDDCIRTSLLESEEHTCPTCHQTDVSPDALIANKFLRQAVNNFKNETGYTK
RTRKQQQTQQQRQVPSHQMHNQQSALRPLTQPNPQPVLPVNRTAISKPPDVPVTTVISTG
HTSAPASLPSAASAPVRAPSPVKTSRASSTANNAPDLSTAAVHVHQLPPKHEEGDILELS
KTVLVTATTGITTSNPSMSTSSASALKGYQVPVLGHPASHGQSIPTTGQPMRTSGVRPPG
NRPGWEVPSNRGHQQSERVPRSRTQTTNPPPVYVHPPALYPPPPHPVPLPPGVPPPQFPP
QFPPGQPPPTGFSIPPPGFPPAPATISAPWVPPATPAAPASVIPAVTQTPPLSREEFYRE
QRRLKEEEKKKSKLDEFTNDFAKELMEYRKIQKERRRSYSRSRSRSYSGSSFSGSSYSYS
KSRSHSSRSYSRSVSRSPSRSYSRSPSYRRGSGKSRGYRSRSRSRGFHRSRSRSPSYRSY
RSRSRSPNYKAHSPYKRSAPQGENDREFFDRYRDPPPPFDYRELYDRPRDPRDSFERERY
REWERRCRAWYEYYKGYNSGNQPRPRSPTTKDHFSPERFGTAGARRESPPHVRGRRDEFS
AEQASRGRNVANTGNYPEKYSYRETHVAKEQRGSKEKEVPSLRPESKGTKHKKHRKKKKD
ESESVTNLESLREGKKTGEAAGDEGKGSTLFLPLSRDDATPVRDEPMEGDSVPYKATSDK
DRKEKSKAKGEKQKRKAESGTPKKESSGKTAKAPQEKPIERERDKSPRSEPSIKKTREEF
SPMVEGTKIHLLPKSEKFFLPRKVNLKMGHEYQEIKTPKEEKQRKDYPREETKHEKHEKA
VTRDDKSKKAVKTEEKSNKTESKSDKRKRKTDEKVTEKELGTPPTKSSKVETPEAAKPSV
KGKFNSGTEKSTEKHSDLPTDKEDTTPANVPVRKIKINRESGKKIMSGESPAALEEPTEL
VDVNGGKSKPEKVRTKTRKKVTGGEMAGSTLVDYTSTSSAGGSPIRKAEEKMDAKKTVIK
TMEEYNSDTRPPAEDEIVIVQVPRSKWEKEDYETDEDDGKTAAAALNVGKAATSGPGTST
KPVNPPKQTDKEAGPLERIPKTAKEPNLDEAQQEPKAPAKSSILNEKGLKTKDKEHVSDK
ETADKKKALVLPDKPAFTEWDIESTIGKNPLQTSKDPLAEKLEPSSRAASNKEAVPCADG
KVESVDVQIPISKRREERNRDIKRRDSPSKCEELTHGQKSKEQQTESRKHNTESKKNDHS
PGKDRKLHADHSSGSESRSATEESKSTIPSREKEKHTLEVKSNKDRQVSGNKVSHRAETL
AEKNDQEHSLGRGDKDHSRNKPPGPVSRSARHSRHSLDLARETDEAAFEPDYSESDSESE
EAHALREGRETKEIMNQTREVKGVSVGSRNSNTKSHIENSVRPTCSRSHSPSESQPRSRS
SSVSSEDTQDSKKKKKKKEKKKHKKHKKHKKHKKHLGIESELDKTQKHKHKKKKSKKSKD
KEKDKDSDQKVRSSVILRTAETD
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgtacattacaaattttcttctaaactgaactatgacacggtcactttcgat
gggcttcatatttcgttgagtgatctaaagaagactatcatggccagagagaaactaaag
gcggcagactgcgatttacagatcaccaacgcacagactaaggaagaatatacggatgat
aatgctttaatacctaagaattcatcagttattataaaaagaattcctattggaggtgtg
aaatctgcaggcaaaacatttgtcatagatcgttctgaaccagcaagtggaacatcgaaa
gcattttatccttttgctcatggaggcaacaggggaaggcaagagaaagaggttacagac
ctagttaccagactgcagggaaagctaagcgagattgatgactctggaacatctatctct
ctggcccagcttacaaagacggccaatctggctgaagctaacgcctcagaggaagataaa
attaaggcaatgatgactcaatctggtcaagaatatgatccagtcaattacatgaagaaa
cctttgggtcctcctcctccaagttatacttgttttcgttgtggaaaacctggccattac
attaaaaactgcccaacaaatggggacaaaaattttgaagctgtaccaaggattaagaaa
agcacggggattccccgcagttttatggtagaagttgatgacccaaacatgagaggtgca
atgctcaccaatactgggaagtacgctatacccacaattgatgcagaagcatacgcacag
ggcaagaaggaaaagccaccattcttacccgaggagccctcatcatcatcagaagaggaa
gatccaatccctgatgaactgttgtgccttatctgcaaagatcttatgatggatgctgtt
gtcataccatgctgtgggaacagttactgtgatgattgtatcagaacatcactactggag
tctgaggaacacacctgcccaacttgccaccagacagatgtttctccggatgctttgata
gcaaacaaatttttaagacaggctgtgaacaacttcaaaaatgaaactggttacacaaaa
agaactcgcaagcaacagcagactcagcagcaacgacaagttccatcccatcaaatgcat
aatcaacaatctgctctgaggccgttaacccagcccaaccctcaacctgttctccctgta
aacagaactgccatctcaaagccaccagacgtgccggtcaccactgttatttcaactggc
cacacatctgccccagcttcccttccaagtgcagcctctgccccagtacgtgctccttct
cctgtgaaaactagtagagcttcctccactgccaacaatgctccagatctgtcaacagca
gcagttcatgttcatcagctacctccaaagcacgaagaaggggatattcttgaactcagc
aaaacggttctagttactgccactactggaataaccactagcaatccatccatgtccacg
agcagtgcttctgcattgaagggttatcaggttcctgttcttggtcatcctgcttcacat
gggcaatccatacccacaacaggtcagccaatgaggaccagtggagtaagaccaccagga
aaccgacctggctgggaagtgccatccaacagagggcaccagcagagtgagcgtgttcca
agaagcagaacacagacaacaaaccccccaccagtgtatgtgcaccccccggccttgtat
cctcctccacctcacccagttcctcttcctccaggagtgcctccccctcaatttcctcct
cagtttcctcctggccaacccccacccacaggatttagcatccctcccccaggattccct
ccagctccagccacaatttctgctccatgggtacctcctgccaccccagcagctcctgct
agtgtaataccagcagttacacaaacacctccactgtccagggaggagttctacagggag
cagcgacgtctaaaagaggaggagaagaaaaagtcgaagcttgatgagttcaccaatgat
tttgctaaagagttaatggaatatagaaaaatccagaaggaacgcagacgctcctactcg
aggtctaggtcacgctcatatagtggatcgtcgttcagcggaagctcatactcttattcc
aagtccagatctcattcttcacgatcttattctcggtcagtcagtcgatccccaagtcgt
tcctattcaaggtctccttcgtatcgaagaggtagtgggaaaagtcgaggttatcgttcc
agatccaggtctcgtgggttccacagatcccgatccaggtcaccatcctacaggagctat
cgctcccgttcccgatctccgaattacaaagcccattctccttacaaacggagtgcccct
cagggtgaaaatgatcgtgagttttttgaccgttacagagatccaccacctccgtttgac
tacagagaactttatgatagacctcgtgatccaagagactcgtttgagagggagcggtat
agagagtgggaaagacgatgcagagcatggtacgaatactacaagggctacaacagtggt
aatcagccaagacctcggtctcccacaactaaggaccacttctctccagaacgctttggc
acagctggtgccaggcgtgaaagtccacctcatgttcgaggccgccgggacgaattttca
gcagaacaagcctcccggggtcgtaatgtggctaacactggtaattatccagaaaaatac
tcttacagagagactcatgttgcaaaagaacagagagggtcaaaagaaaaagaagtgcca
agtcttcgtcccgagtctaaaggaacaaagcataaaaaacacaggaaaaagaaaaaagat
gaatcagagtcggtaactaacctcgagtctttgcgggaggggaagaagaccggagaggct
gctggtgatgaagggaaagggtccaccttgtttctgcccctcagcagagacgatgcaaca
cctgtgagagatgagcccatggaaggagactctgttccctacaaagccacatctgacaag
gacagaaaggaaaagtcaaaagcaaaaggtgagaagcagaaacgcaaagcagaaagtggc
acaccaaagaaggaatcttcaggaaaaacggcaaaagcccctcaggaaaagcccatagag
cgagaaagggataaatcccctcgcagtgagcccagcataaagaaaacaagggaggaattt
tctcccatggtagaggggacaaaaatccatctgctgccaaaaagtgagaagttctttctg
cccagaaaagtgaaccttaaaatgggccatgaataccaagagattaagactccaaaagag
gaaaagcaaagaaaggattaccccagagaggagaccaaacatgagaaacatgaaaaagct
gtcactagagacgacaaatcaaaaaaggcagtcaaaacagaggaaaagtcaaataaaaca
gagtcaaaatctgacaaacgtaaacgaaaaactgacgaaaaggtcactgagaaagaactt
ggaactcctccaactaaatcatcaaaagtagagactccagaggcagcaaaaccttcagtg
aaaggtaaattcaactctggcactgagaaatcgaccgaaaagcattcagacctgcctacc
gacaaggaggacacgactccagcaaatgtgccagtgaggaagatcaaaataaacagggag
agtggcaaaaagatcatgagcggggagtccccagctgcactggaagagccaacggagttg
gtggacgtaaacggtggtaaatccaaacctgagaaagtgagaacaaagacgaggaagaaa
gtgactgggggcgagatggctggttcaacccttgtggattacacaagtaccagttctgct
ggagggagccctattaggaaagcagaagagaaaatggatgccaagaagactgtgatcaaa
actatggaggagtacaacagtgatactcgacccccagctgaagatgaaatcgtcattgtc
caagttcctcgatccaagtgggagaaggaagattatgagacagatgaagatgatggaaag
acagcagctgctgcattaaatgttgggaaagctgccacctcaggaccaggcaccagcacg
aaacctgtaaacccaccaaaacaaaccgataaagaggctggtcctttggagagaatccca
aaaactgctaaagaaccaaacctagatgaggctcagcaggagcccaaagcaccagcaaaa
agttcaattctaaatgagaaaggtttgaagaccaaagataaggagcatgtgtcagacaag
gagactgcagacaaaaagaaagctctggttctgcccgacaagccggcatttacagagtgg
gatattgagtcaacaattggtaaaaatccccttcaaacttcaaaagacccgctggctgaa
aagttggagccaagcagcagagcagcctcaaacaaagaggcagttccttgtgctgatggg
aaagtggaaagtgtcgatgtgcagatcccgatatccaaacgtagagaggagcgaaaccga
gatattaagaggcgagattctcccagtaagtgtgaagaattgacacacggtcaaaaaagc
aaggaacaacagacggaaagcaggaaacataatacggagtcgaagaaaaatgaccacagt
cctgggaaagatcggaagcttcatgcagaccacagcagtgggtccgagtccagaagtgcc
actgaagaatcaaaatcaaccattcccagccgagaaaaggagaaacacacattggaagtc
aagagtaataaggacaggcaagtaagtgggaataaggtctctcaccgggctgaaacatta
gctgaaaagaatgaccaagagcattctcttgggcggggtgataaagatcacagccgcaac
aagcccccaggacctgtcagccgttctgcccggcattcccgccactccctggatctggcc
agagaaactgacgaggctgccttcgaacctgactacagtgaaagcgacagcgagagtgag
gaggcacatgcactgagggagggaagggagacaaaagagatcatgaaccaaactagagag
gtcaagggagtgtctgtgggctccagaaacagcaacacgaaaagtcacatcgaaaacagt
gtgcgccccacatgcagtcggagccacagcccaagtgagagccagcctcggagccgcagt
agcagtgtcagctcagaggacactcaggacagcaagaagaaaaagaagaaaaaggagaaa
aagaaacataaaaaacacaagaagcacaaaaagcacaagaaacatttgggcattgagtct
gaacttgacaaaacacagaaacacaaacataaaaagaaaaaatctaaaaaaagcaaggac
aaagagaaggacaaggacagtgaccagaaggtccgatcatctgtcatcttacgaacagcg
gaaactgattag
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