Scyliorhinus canicula (smaller spotted catshark): 119979393
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Entry
119979393 CDS
T11175
Symbol
vti1a
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1A isoform X1
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
119979393 (vti1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119979393 (vti1a)
Membrane trafficking [BR:
scau04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
119979393 (vti1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
Sec20
Mer2
LMBR1
Sec8_N
CFAP141
DUF5344
Laminin_II
OATP
Motif
Other DBs
NCBI-GeneID:
119979393
NCBI-ProteinID:
XP_038677471
LinkDB
All DBs
Position
16:complement(27937923..28342078)
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AA seq
226 aa
AA seq
DB search
MSSDFEVYEQDFGTLTAEITNKVGRIPKLSGDDKKSMVANVEKQMEEARELLEQMDLEVR
EIPLQSRGLFSTRMKSYKQELEKLDKDFKRSRIAYSDEVNLRNELLGDDGNTSEKQLIKL
REERACLLDNTERLERSTRRLEAGYQLTVETEQIGQEILENLHHDKEKIQRARERLRETD
TNLGKSSRVLTGMLRRIIQNRILMFILGAIILLTIVLAIYFAVTGH
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggatttcgaggtttacgagcaggatttcggaaccctgacagcggagatcacc
aataaagtggggaggataccgaaattatctggagatgacaagaaatctatggttgcaaat
gtggaaaagcagatggaagaagcccgggaattgcttgaacaaatggaccttgaggtacgg
gaaataccactccagagccgtggtctgttcagcacccgaatgaagagctataaacaggaa
ttggaaaagcttgataaggactttaaaaggtcacggatcgcctacagtgatgaggtaaac
cttcgaaatgagctcctaggggatgatgggaatacctcggagaaacagttgataaaattg
cgtgaagagagagcatgcctgttggataatacagagcggttagaaaggtcaacacggaga
ctggaggctggataccaactaaccgttgaaactgaacaaattggacaggagatcctggag
aacctgcatcatgacaaagaaaagattcaacgagctcgggagaggctgcgtgaaactgat
acaaacctcggtaagagctccagggttttgacaggaatgttgcgaaggatcatccagaac
cggatcctcatgtttatcctgggcgccatcattcttctcaccattgtgctggccatttat
tttgctgtcacaggccactga
DBGET
integrated database retrieval system
