Scyliorhinus canicula (smaller spotted catshark): 119979410
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Entry
119979410 CDS
T11175
Symbol
ybx1
Name
(RefSeq) Y-box-binding protein 1
KO
K09276
Y-box-binding protein 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119979410 (ybx1)
03019 Messenger RNA biogenesis [BR:
scau03019
]
119979410 (ybx1)
03041 Spliceosome [BR:
scau03041
]
119979410 (ybx1)
Transcription factors [BR:
scau03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, YB-1/DbpB-like
119979410 (ybx1)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
119979410 (ybx1)
mRNA cycle factors
Common to processing body (P body) and stress granule
119979410 (ybx1)
Spliceosome [BR:
scau03041
]
Common components
Common spliceosomal components
General mRNP proteins
119979410 (ybx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSD
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-GeneID:
119979410
NCBI-ProteinID:
XP_038677528
LinkDB
All DBs
Position
16:complement(143592392..143608756)
Genome browser
AA seq
307 aa
AA seq
DB search
MSEAETEQQPEQPQQQQPDKPKSPGEKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVF
VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSRYAADRNRY
RRYNPRRRGPPRNYQQNIEGGEKGDGAETATDGENQEYQNQQHRPPYRRQRYPPYFVRRR
YGRRPQYSNQPQGEVTEGGEINENQVAGEEGGKPNRGQNRFRGYRPRYRRGPPRPRPPRE
GSSEEDKENQGDGQQDQQSHPRRFRRNYNYRRRRPQNPKPKDGEETKAPETPAENISAPE
TEQGNAE
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggccgagacagagcaacaacccgaacaaccacagcagcaacagccagacaaa
cccaaatcccctggggagaagaaagtcatcgcaacaaaggttcttggaacagtaaagtgg
ttcaatgtacgaaatggctacggatttatcaacaggaatgatacgaaggaagatgtattt
gtacatcagactgccataaagaagaataacccacggaaatacctacgtagtgttggagac
ggtgaaactgtggagtttgacgtagtggagggcgaaaagggtgcagaggcggcaaatgtc
actggtccaggtggagttccagtccaaggaagccgatatgctgcggaccgaaatcgttac
cgtcgctacaaccctcgccgccgaggcccaccgcgtaattaccaacagaacattgaaggt
ggagagaaaggagatggagcagagacagcaacagatggagaaaaccaggaatatcaaaat
caacagcatcgccctccatacagaagacagcgttatccaccctactttgttcgtcgccgc
tatggtcgccgtccacaatatagcaaccagcctcagggagaagttactgagggtggtgaa
ataaatgaaaatcaagttgctggggaagaaggtggtaaacccaacagaggacaaaatcgt
tttaggggctaccgtccacgctaccgcagaggacctcctcgcccacgtccaccaagggag
ggaagtagtgaagaagataaagaaaaccaaggggatggccaacaagatcaacagtcgcac
cccaggcgatttcgccgcaactacaattataggcgtcgccgaccacaaaaccctaaacca
aaagatggcgaggagaccaaggcacccgaaacaccagctgagaacatctctgctccggag
accgagcagggcaatgctgagtaa
DBGET
integrated database retrieval system
