Scyliorhinus canicula (smaller spotted catshark): 119979485
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Entry
119979485 CDS
T11175
Symbol
nphp4
Name
(RefSeq) nephrocystin-4 isoform X1
KO
K16478
nephrocystin-4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
scau03037
]
119979485 (nphp4)
Cilium and associated proteins [BR:
scau03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
119979485 (nphp4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cep192_D3
DUF4305
Motif
Other DBs
NCBI-GeneID:
119979485
NCBI-ProteinID:
XP_038677692
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All DBs
Position
16:101588321..102179441
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AA seq
1431 aa
AA seq
DB search
MAAAAAAALPGSGWGARFNWGPPPHFQRYGGQVDTPEGFQLLLRILEGLPFKASLMEGVA
NVQCQLRLTLFDTTYSHFFGRTWKSSPQPIDRVHGQPAKVLFNQAVYFHTSLNCSHVAII
VEVVAIAKKREGNKQILSCGFGILHLYNKQKLASDAAKNQNVKRLSLYHGTPRALLHPAS
QDPIEKNTFMTLIEGSTILYSLSSHPPLIEVSHLIPENVLVSGTEVIPGVVAPSKQMSNV
LKKPTLMKTITCYLDKLSLHLYPTLEKFEKELVELLNADRLLKKGQVSDGSTVVIQERRL
HVCVHNSWCYVQKPQVVVLIPGTVQRKPASFSKSLPKKSLVLRSRIQLKELVKHQMYGIV
FHLEYVFSSSTGADGKSQTRRFSLVGLETNLLHHLQTQQSASASSLDKMSYMQMLRWAVW
NPFLEPNTTDVTVSLHGGPSPNPSNLLVYKTPSTEMSSEEVKQVESGTITFRFSCRTDRY
TGSTYEQSDESRKSSRTIGSQHSFFRRKSSDASESQHATSRSQLTTSHWLSTTSLPRKGP
VQKQLGNQQEPRDGIFNMYPSGAPEPHVDEHLQELPFTQVQVPILALRTEAGGATTVISR
AALAQLHAVGFPEILDDNNELATVIDSDELSRINLKREKADNLQCNEIILQFLAFSRVTA
GNHQPGSVYFTFQFYRFPPVTTQQLKLMMMRNAEKGTSKSTPFILVPLNKNGTGDLIRSA
VDSPGLELKYMVEPSYMKEGEQRLFMQYLATQTLQIDVWDAESLLLIGTATVELKYLLRQ
GRTAVQVSHELAIITTEYAPDVPMALADITKHGTVKPHGMTTVTKGKLHMRLGNVGHEPK
RTAKSPLPTPQSRIISSHDGTGGFSGGSLSTQGMKRLIGHNMSRAQRMIDLDSELASVIF
SRARLNSFGHQELDNDADIVRKRKLERMMAVRQLESGVDLKSKTRILAKHEERIHHERDL
QIVEAYRERIKTESISNMLSHAITTQYTLYATLGNAEFFEFCLKNPYSVQHTITIECEHP
ELSVIVNSREWKHFKNLTKTLTPLEEDMFHVEGGVQFPQVYLRPKEIVYIPFKFQTFSAN
HSIAPQGPADGKLSKTNIVNQPNSAPKMIEVSFKIENQKPIAILQVNVEDQPYIIDQTFR
FYHPELTFLKKSIRLPPLEALSGLTVQSPNSEFQTHVRCSDFNIICETKKVALNEPQDVF
LKVACGPSPEVKKFFVIVYMDPWLAVPIQIWQFYIHSLQRIDVSCVVGELTQFSLVLRGT
QTVRKVAAYTSNPEELQTVPSDVFLLPPHTVKDLHISLRPQREGDRSIYLNVVDVDFRQL
LASWLICLNCQQPSICKAFEITIPVGEGKGINKRINYTNPYPNKRMYFLRTNRPDLLQYK
EDSFELHGGETYHIGLRFAPGQNPGMEEILILINDQTEKNEATYCVKITYQ
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggcggcgctgcctgggagcggctggggggctcggtttaactgg
ggacctccccctcacttccagcgctatggcgggcaggtggacacgccggagggttttcag
ctcctgctcaggattctggagggactgccgtttaaagcgagtttaatggagggagtggcg
aatgtccagtgtcagctgagactcaccctctttgatactacatactcccatttctttggc
agaacctggaagagttctccccagcccatagatcgtgtccatggccagccagccaaagtg
ctcttcaatcaggcagtttacttccatacatccctcaactgcagtcatgttgcaatcatt
gtggaggtggtagcgattgcgaagaagcgtgaaggtaataaacaaatcctctcatgtggg
tttggaattctccacttgtacaacaagcagaagcttgcctcagatgcagctaaaaatcaa
aatgttaaaagattgagtctctatcatggtactccgagggctttgctgcatccagcgtca
caggaccccattgagaagaatacatttatgacgttgattgagggcagcaccatattgtac
tcactttcgtctcatcctcctctaatcgaagttagtcaccttatccccgaaaatgtgttg
gtctctgggacggaagtaattcctggggtggttgcaccttccaaacagatgagtaatgtt
ttgaagaaacctactttaatgaagactataacatgctacctggacaagctgtcccttcac
ctgtacccaacactggagaaattcgaaaaggagctggtggaattgcttaatgcagacaga
ttgctgaagaaaggccaagtttctgatggaagcacagttgttattcaagaacgaagactg
catgtttgtgtgcacaacagctggtgctatgttcagaagccacaggtggtagttttgata
cctgggactgtgcagagaaaacctgcgagcttctccaaaagtttgccaaagaagtcgcta
gtcctcaggagccgtatccagctgaaggaattggtaaagcaccaaatgtatggcatagtt
ttccacctggagtatgtattctccagctccacaggagcggatggaaagagccagactcgg
aggttctccttggtaggattagagaccaacttgcttcaccatctccaaactcagcagtcc
gcttctgccagctccttggacaaaatgtcgtacatgcaaatgctgcgctgggctgtttgg
aatccattcttggaacctaataccactgacgttacggtatcacttcatggcggaccttca
cctaacccgagcaatttgttggtttacaaaactccctccactgagatgagctcagaggag
gtaaagcaggtagaatcgggcactatcacctttcgcttctcatgtcgtacagataggtac
acaggcagtacctacgagcaatcagatgagtccaggaaatcaagccgaacgataggatca
caacattctttcttccgcagaaaatcctcagatgcttcagaatcacaacatgcgacctcc
cgttcccagctgaccacatcacattggctctcaaccacaagccttcccaggaagggacca
gtgcagaagcaacttggtaaccagcaggaacctagagacgggatctttaatatgtacccc
agtggtgctccggagccccatgtagatgaacacttgcaagaattgcctttcacacaagtg
caagtaccaatcctcgccctgcgaacagaggctggaggggctaccactgtgatttcgaga
gcagctttagcacagttgcatgctgttggcttccctgagatcctggacgataacaatgag
ctggcaacagtgattgactctgatgaactttcaaggattaatctgaagagggaaaaagca
gataatcttcaatgcaatgaaattattctgcaatttctggctttcagtagagtaactgcg
ggtaatcatcagccaggatcagtctacttcacctttcagttttatcgctttccaccggtg
acgacacagcagctgaaactgatgatgatgcggaacgcggaaaagggaacttcaaaaagt
acccctttcatccttgtacctctaaacaaaaatggcaccggtgacttaattcgatctgct
gtagattctcccgggctggagctgaaatatatggtggagccgagttatatgaaggaagga
gaacagcgtttatttatgcaatacctcgccacgcagacattgcagattgatgtttgggat
gcagaatccttgcttcttattggcactgccactgtggaactgaagtacttgctacgccag
ggtcgcactgcagtccaggtttctcatgaactggcaatcataaccacagaatatgctcca
gatgtaccaatggccttggctgacatcacaaagcatggcactgttaagcctcatggaatg
acaacagtaacaaaaggaaaactacatatgcgcctaggcaatgttggtcacgaacctaag
cggacagcaaaaagccctctgcctactcctcagtcaaggatcatctcctcccatgatgga
actggcgggttttctggtggaagcctatctacacagggcatgaagagactcattggtcac
aacatgtctagagcacagcgtatgatagacttggacagtgaactggcctcggtcattttc
tccagagcccgacttaacagttttgggcatcaagaactggataatgatgcagatattgtt
cggaaacggaagctggagaggatgatggctgtccggcaactcgagtcaggtgtcgatctt
aaatcaaagacccgcattttggcgaaacacgaggagcgaatccatcacgagagagactta
caaatcgtagaagcataccgtgagcggattaaaacggaaagtatcagcaacatgttgtcc
cacgccatcaccacgcagtacacgctgtatgccacccttggaaacgctgaattttttgaa
ttttgcctgaaaaatccctacagtgttcaacacacaataaccattgaatgtgaacatcca
gagctcagcgtcattgtaaacagcagagaatggaagcacttcaagaacctcaccaaaacc
ctgacaccactggaggaggacatgttccacgtggaaggaggagtacaattcccacaggtc
tacctacggccaaaagagattgtctatatcccatttaaattccagaccttcagtgctaac
cactccatcgctccacagggaccagctgatgggaaactttcaaaaacgaacattgttaat
cagcctaactccgcacccaagatgattgaagtgtctttcaaaattgaaaatcagaagccg
attgccatcctacaggtgaatgttgaagatcagccgtatattattgatcagacatttcgc
ttctaccatcctgagctcacattcctgaagaaatctatccgcctacctccattggaggct
ctgtcaggtttgacagtacaatcgccaaattctgaatttcagacccacgttcgctgcagt
gatttcaacatcatttgtgagacaaagaaagtggccctcaatgagccgcaggatgttttc
ctgaaagtggcatgtggtcccagtccagaggtcaagaaattctttgtcattgtttacatg
gatccctggttggctgtgcccatccagatatggcagttctacatacactcccttcaacgg
atagatgtcagctgtgtggtcggggagcttactcaattctcactcgtcctgcgagggacg
caaactgtccgaaaagtggctgcttacacctcaaatcctgaggagcttcagactgtacca
tcagatgtcttcttacttccaccgcacactgtgaaggatctgcacataagtttgcggcct
cagagagaaggagataggagtatctatttgaatgtggtggatgtagatttccgacagttg
ctggcgtcctggcttatctgcttaaattgtcaacagccttccatctgtaaggcttttgag
atcactattcctgtcggtgaagggaaagggatcaacaagcgcataaattacaccaatcca
taccctaacaaaaggatgtacttcctgcgaaccaatcggccggatttactccaatacaag
gaagattcttttgagctacatggtggtgagacttaccatataggcctgcggtttgcaccg
ggccaaaatcctggcatggaggaaatcctgattttaattaatgaccagactgagaagaat
gaagcaacttactgcgtgaaaattacataccaataa
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