Scyliorhinus canicula (smaller spotted catshark): 119979623
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Entry
119979623 CDS
T11175
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119979623 (clstn1)
Cell adhesion molecules [BR:
scau04515
]
Cadherins
Cadherin related
119979623 (clstn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
SID-1_RNA_chan
Toxin_R_bind_N
EphA2_TM
PRIMA1
V_ATPase_I
PFF1_TM
Cadherin_C_2
Neur_chan_memb
Zip
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
119979623
NCBI-ProteinID:
XP_038678045
LinkDB
All DBs
Position
16:138064468..138164238
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AA seq
980 aa
AA seq
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MNPVRCKVPAWIAWLLLSLTATVTGSAGKVNKHKPWIETTYHGIVTENDISVLLDPPLIA
LDKDAPLRYAERYEVTFTKEGEICGFRIHGQNVPFEAVVVDKTTGEGVIRSKEKMDCELQ
KEYTFTIQAYDCGEGPDGGNMKKSHKANVHIQVNDINEYSPVFKEKSYKATIIEGKKYDS
VLRVEAIDADCSPQFSQICSYEIVTPDVPFTIDKDGYIKKSEKINYSKDRQFKLAVTAYD
CGKKRSTEDVLVKINIKPTCKPGWQGWSKRIEYEPGTGSLALFPAMRLETCDEPITSIQT
VVELETSHIGKGCDRDTYSEKSLHRLCGAASGTIDLLPSPSSNTNWTVGLPTDNGHDSDQ
VFEFNGTQAVKIPEGVLTTNLKEPFTISVWMRHGPVSSIHGEKETIICNSDKREMNRHHY
SLYVHNCRLVLLFRQNPSENENFRPAEFHWKLDQVCDKEWHHYVLNVDIPTVALYVDGVS
YDPFLVTEDYPLHHSKIETQLVVGACWQEYTGSENENETVTEAYPGGEFRMSQFFLGNLA
GLMIRTGKIESKKVIDCLYTCKEGLDLLDSENLYKGVMVHFNPTQSMLSMEGDDIENFDK
TMQHVSYLNSRQFPTPGIRRLKITTTVKCFNEETCITVPDVEGYVMVLQPDEPKISLSGI
DHFARAASEFESNEGVPLFPELKIVSTITREVEPEGEDEDEPTVQESMVSEEIMHNLDTC
EVSVVGDELNSEQESFEVDPSQLRQRSIEMSNSSTGMTITGVNTMSSYEEMLHLIRYRNW
NSESLFERKFKLVCSELNGRYASNEFKVEVNVIHTANPVEHPNHVLAQPEFVRPVQHASV
DLSGHNLASPHSSSVVPSAATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQENGKENE
MDWDDSALTITVNPMETYEDQHSSEEEEEEEEEESEEGDEEDDITSAESESSEEEEGEQE
DQQNVNRQQQLEWDDSTLTY
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctgtcaggtgtaaagtccccgcctggatagcctggctcctcctgagcctgacc
gcaaccgtcaccgggtccgccggcaaagttaacaagcacaagccatggatagaaaccacg
tatcatggtattgtaacagaaaatgacatctcagtcctgctggatcctccattaattgcc
ttggataaagatgcacctctacgttatgcggagaggtatgaggtgacattcaccaaagaa
ggtgagatttgtggatttagaattcatgggcagaatgttccatttgaagctgtggtggtt
gataaaaccacaggtgaaggtgtcatacgttcaaaagagaagatggactgtgagctgcag
aaagagtacacctttactatccaggcgtatgactgtggagagggtccagatgggggaaat
atgaagaagtcccacaaggccaatgttcacatccaggtgaatgacataaatgagtactcc
ccagttttcaaagagaagtcttacaaagccacaatcattgaaggaaagaagtatgacagt
gtcttgagagtggaagcaattgatgcagactgttcacctcaattcagccaaatctgtagt
tatgaaattgttactcctgatgtaccgttcactattgataaagatgggtatattaagaag
tctgagaagataaactatagcaaagaccggcagttcaagcttgcagtaactgcttacgac
tgtggaaagaaacgatcgacagaagatgttcttgttaagataaacattaaacctacatgt
aaacctggctggcaaggctggagcaaaagaattgaatatgaacctggcactggaagcttg
gcattgtttccggctatgcgtctggagacatgtgatgaacctattacatccattcagaca
gtggttgaattggaaacaagtcatattggcaaaggatgtgacagggacacttattccgaa
aaatcactccacagactttgtggtgctgcttctggtacaattgatctcctcccctcacca
agtagcaatacaaattggacagttggtcttcccactgataatggccatgacagtgatcaa
gttttcgaattcaacggcactcaagctgtgaaaatcccagaaggcgttctgacaacaaat
ctaaaagaaccatttacaatttctgtgtggatgcgacatggaccagtttctagcattcat
ggggaaaaggaaaccatcatttgcaactctgacaaaagagaaatgaatcgtcatcactac
tccctttatgtgcacaactgtcgtctggttttactcttccgtcaaaatccttcagagaat
gagaactttcgacctgcagagttccattggaaactagatcaggtgtgtgataaagaatgg
catcactacgtgctaaatgttgatatcccaactgtggccctatatgtcgatggagtatca
tacgatccattcctagttactgaagattatcccttgcaccattcaaagattgaaactcaa
ttggtggtgggagcatgctggcaagaatatacaggaagcgaaaatgaaaatgaaactgtg
actgaagcctatccaggaggtgaatttcgcatgtctcagttcttccttggcaatctagct
ggtttgatgattaggactggcaaaattgagagcaagaaggtgattgactgcttgtacacg
tgtaaagaaggattggatctcttggattctgagaatctttacaaaggcgtgatggttcac
ttcaatcccacccagtcgatgctcagcatggaaggggatgacattgaaaactttgacaag
actatgcagcatgtgtcataccttaactctaggcagtttccaacacctggaatcagaaga
ttgaaaatcaccactactgtgaagtgcttcaatgaagagacttgcatcacagttccagat
gtagagggctatgtaatggtacttcagcctgatgaaccaaagataagcctgagtggtatt
gatcactttgcacgtgctgcctctgaatttgaaagtaatgagggtgttccactgttccca
gagctgaagatcgttagcaccatcacacgagaagtggagcctgagggcgaggatgaagat
gaacctacagtccaagaatctatggtatctgaagagatcatgcacaatctggatacatgt
gaggtctctgttgttggagatgagctgaactcagaacaagagagctttgaagttgatcca
tctcaactccgacaaaggagtatagaaatgagcaactcctctaccgggatgactatcaca
ggtgtgaacactatgtcaagttatgaagagatgctgcatttgatccgttaccgaaactgg
aacagtgagtcactgtttgaaaggaagtttaaacttgtttgctctgagctgaatggacgc
tatgccagtaatgaattcaaagttgaggtcaatgtcattcacactgctaatccagtggag
caccccaaccatgtattggcccagccggagtttgttcgcccagttcagcatgcttccgtt
gacttgtctgggcacaatcttgcaagcccacattcatcctcagttgttcccagcgccgca
acagttgtcattgtggtttgtgtcagcttcctggtcttcatgataatccttggggttttc
cgaatccgtgccgcacatcagcggactatgcgggatcaagagaatgggaaagagaatgag
atggattgggatgattcagccttgacaattacagtaaaccctatggagacatatgaagac
cagcatagcagtgaagaggaagaggaggaagaagaggaagaaagtgaggaaggtgatgag
gaagatgacattactagtgcagaatctgaaagcagtgaggaagaagaaggtgagcaggaa
gaccagcagaatgtgaacagacaacagcaacttgaatgggacgactcaactcttacctat
tga
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