Scyliorhinus canicula (smaller spotted catshark): 119979625
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Entry
119979625 CDS
T11175
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scau03016
]
119979625 (trub1)
Enzymes [BR:
scau01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
119979625 (trub1)
Transfer RNA biogenesis [BR:
scau03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
119979625 (trub1)
Prokaryotic type
119979625 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DMA
Motif
Other DBs
NCBI-GeneID:
119979625
NCBI-ProteinID:
XP_038678051
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All DBs
Position
16:complement(24729896..24799827)
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AA seq
283 aa
AA seq
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MAAGSGSVALAEKLQSLNGLFAIHKKKGPTSADVLNILKTKLLKEAGIKQHPMKRKRQAL
KLGHGGTLDSAASGVLVVGIGKGTKMLSGMLSCSKKYTTVGELGKATDTFDALGMVTEEQ
SYDHITKNDLESILKKFTGNVMQTPPLYSALKQNGQRLSCLMKKGEAVEAKPARPVVVFD
LSVQDYNPPLFTLNVECGGGFYVRSLVNDLGKELSSCAHVKELIRTKQGPFTLDEHALQE
EKWTIDEVVKAIESCTELVSSEGACKKLKMNPQENTEQVKEAD
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggatcgggatccgtcgctttggctgagaaactgcagagtctcaacgggctc
tttgctattcacaaaaagaaagggcccacttcagccgatgtgctgaatatcttgaaaact
aagctgctgaaagaggctggcatcaaacaacatccaatgaagcgaaagagacaagctctc
aagctgggacacggaggaacccttgacagtgcggcctcaggagtgcttgtggttggcatt
ggcaaagggaccaaaatgctcagcggaatgttgtcctgctccaagaaatatacaacagtt
ggggaacttggaaaagccacagacacatttgatgctctcgggatggtgacagaagaacaa
tcgtatgatcacataacaaagaatgatctggaaagcattctgaagaaatttacaggaaac
gttatgcagactcctccattgtattctgctttgaaacaaaatggacaacgactttcctgt
ttgatgaagaaaggagaagctgtagaagctaaacctgccaggcctgttgtggtctttgat
ctttctgtacaagattacaatcctcctctctttactctaaatgttgaatgtggaggtggt
ttttatgtccgcagtttggttaatgacctcggcaaagaactttcttcgtgtgcccatgtg
aaggagttgataagaaccaaacagggccctttcacattggatgaacatgcacttcaagag
gagaaatggacaatagatgaagtagtaaaagctatagagtcctgcacggaattggtttca
tctgaaggagcatgcaagaaattgaagatgaacccccaggaaaacactgaacaagtaaaa
gaagctgattga
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