KEGG   Scyliorhinus canicula (smaller spotted catshark): 119979683
Entry
119979683         CDS       T11175                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:scau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    119979683 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:scau03021]
    119979683 (taf5)
   03036 Chromosome and associated proteins [BR:scau03036]
    119979683 (taf5)
Transcription machinery [BR:scau03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     119979683 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     119979683 (taf5)
Chromosome and associated proteins [BR:scau03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     119979683 (taf5)
    STAGA complex
     119979683 (taf5)
    TFTC complex
     119979683 (taf5)
    SAGA complex
     119979683 (taf5)
    SLIK complex
     119979683 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 TFIID_NTD2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_Aladin ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_VPS8 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_DCAF12 Tricorn_2nd VPS8_N LisH_PAC1 Beta-prop_ACSF4 Cytochrom_D1 Beta-prop_WDR11_2nd ABM-like RAB3GAP2_N PROPPIN
Other DBs
NCBI-GeneID: 119979683
NCBI-ProteinID: XP_038678149
LinkDB
Position
16:complement(2273689..2293152)
AA seq 741 aa
MAAVPEPPAAPSEAPAPSPASGPTASPAPSPVPVPTPSPSPSPSPTLKVEPAESPAESQR
PGSAAQAPAQPPAQAPAQPPAGTDLPDKQTLLAVLQFLKKNHFREAEEILRKEANLQDSL
DESRAAGQRGSDSVHQPDVSSVLSAYSNEGDPSLYEEYYTGLKGFIETALDAFKAELSTL
LYPVFVHLYLELVYNQHEREARHFFHKYHGDQEGYYHDDLRVLAGLSKKEHMQGNETVLD
FRTSKFVLRISRDSYQCLKRHLQERHNNQIWNIVQEHLFIDVFDGMPRSKQQIEVTSGGM
AGEAKREANKTKVFFGLLKEPEIELPLDDEDEEGENEEGKPKKKKPKKDSLGAKSKKQDP
NAPPQNRIPLPELKDSDKVDKIMIMKEATKRVKLGPDCLPSICFYTFLNAYQGLTAVDFT
DDSSLIAGGFADSTVRVWSVTPKKLRSVKGATDLSLIDKESEDVLERIMDEKTACEFKML
LGHGGPVYGTSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYY
FISGGHDRVARLWVTDHYQPLRIFSGHLSDVTCTRFHPNSNYVVTGSADRTIRLWDVLNG
NCVRILTGHKGPIHSLVFSPNGRYLASGATDGRILLWDIGHGLLVGELKGHTDTVYALKF
SRDGEILASGSMDHTVKMWDTVKAFEDLETDDFSTATGHINLPDNSQELLLGSYMTKSTP
VIGLHFTRRNLLLAAGAYNPL
NT seq 2226 nt   +upstreamnt  +downstreamnt
atggcggcggtgccggagccgcccgcggcgccaagcgaggccccggctccgtccccggcc
tcgggcccgaccgcctccccggctccgtccccggtcccggtccccactccctctccctct
ccctctccctcacccaccctgaaggtggagccggctgagagcccggctgagagccagcgg
ccaggctcggcggcccaggccccggcccagcctccggcccaggccccggcccagcctccg
gccggcaccgacctccctgacaagcagaccctgctggccgtgctgcagttcctcaagaag
aaccacttcagggaggcggaggagatcctgcggaaggaggccaacctgcaggacagcctg
gacgagtctcgggcggccggccagcgcggctcagactcggtccaccagcccgacgttagc
tcggtgctgtcggcctacagcaacgagggcgaccccagcctgtacgaggagtattacacc
ggcctcaagggcttcatcgagacggcgctggacgccttcaaagccgagctctccaccctg
ctctaccccgtcttcgtgcacctctacctggagctggtctacaaccagcatgagagggaa
gcccgccacttcttccacaagtatcacggcgatcaggaaggttattaccatgatgacctg
cgagtactagctgggctgtcgaagaaggaacacatgcagggtaatgaaaccgtgctggat
tttcggaccagtaagtttgtgctgcgtatttcacgggactcctaccagtgcctgaagcgt
cacctacaggagagacacaacaaccagatttggaacattgtacaggagcacctattcatc
gacgtgtttgatggaatgcccaggagcaagcagcagatcgaggtcacgtctggtggaatg
gccggagaagctaagagggaagcaaataaaacaaaggtgttctttgggctgttgaaggag
ccggagatcgagttgcctcttgacgatgaggatgaggaaggagagaacgaggaggggaaa
ccaaagaagaaaaagccaaagaaggacagcctgggggcgaagagcaagaagcaggaccca
aacgctccaccacaaaacagaattccacttcctgagctgaaagattctgacaaagtggac
aagataatgataatgaaagaagccacaaagcgggtgaagcttgggcctgattgccttccc
tccatctgtttctacaccttcctcaatgcctatcagggtctcactgcggttgacttcacc
gatgattctagtctgatagcaggaggatttgctgattccactgtcagagtgtggagtgtc
acaccaaagaaactgcgcagcgtcaaaggggctacagatctcagtttaatcgacaaggag
tcggaagatgtgctggagcggataatggatgagaaaactgcgtgtgagtttaaaatgtta
ctgggacatggtggcccagtgtatgggacaagcttcagtcctgacagaaattatctgctg
tccagctcagaggatggcacagtgagactctggagtctgcagaccttcacctgcctcgtc
ggctacaaaggacataactacccagtgtgggatacacagttttctccgtacggctactac
ttcatttcaggaggtcacgatcgagtggcacggctttgggtgactgaccactaccagccc
ttgcgaatattctcaggtcacctctctgatgtcacctgcacaagatttcatcccaactcg
aattacgtggtgaccgggtctgcagacaggaccatccggctctgggacgtgctgaatggc
aactgtgttaggatccttacaggacacaagggcccgatacattcgttggtgttctctcca
aatggcaggtacctggcgtctggggcaacagacggccgcatcctgctgtgggacattggg
cacgggttactggtgggcgaattgaaaggtcacaccgacacggtctacgcactaaagttc
agccgagatggcgagattttagcctcaggttctatggatcacacggtgaaaatgtgggac
acggtcaaagcctttgaggacctggagacggacgatttcagcactgccactggccacatc
aacttgcccgacaactctcaggagctgttactaggctcctacatgactaaatccacgcca
gtcattggcctgcacttcacccgtcgcaatctactgctggctgcgggtgcatataacccg
ctgtga

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