Streptomyces cavourensis: CVT27_26330
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Entry
CVT27_26330 CDS
T07023
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scav
Streptomyces cavourensis
Pathway
scav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVT27_26330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scav03019
]
CVT27_26330
03400 DNA repair and recombination proteins [BR:
scav03400
]
CVT27_26330
Enzymes [BR:
scav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVT27_26330
Messenger RNA biogenesis [BR:
scav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVT27_26330
DNA repair and recombination proteins [BR:
scav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CVT27_26330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Zn_ribbon_TFIIB
Pribosyltran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATY98604
LinkDB
All DBs
Position
5928053..5930212
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AA seq
719 aa
AA seq
DB search
MDTLELRTEADTVLAGLVGAPEGSARLREDQWQAVAALVEERRRALVVQRTGWGKSAVYF
VATALLRRRGAGPTVIVSPLLALMRNQVEAAARAGIQARTINSANPEEWETIYGEVERGE
TDVLLVSPERLNSVEFRDQVLPKLAATTGLLVVDEAHCISDWGHDFRPDYRRLRTMLAEL
PAGVPVLATTATANARVTADVAEQLGTGGKDALVLRGPLDRESLRLGVLELPNAAHRLAW
LGERLGDLQGSGIIYTLTVAAAEEVAAFLRQCGYPVASYTGKTENADRLQAEEDLLANRV
KALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVDHADVLLLPGREDEAI
WAYFASVGFPPEEQVRRTLDVLGQAGRPLSLPALEPLVDLRRSRLETMLKVLDVDGAVKR
VKGGWTATGQPWAYDAERYAWVAKQRAAEQQAMRDYVATTGCRMEFLQRQLDDEKAVPCG
RCDNCAGPWLDPAVSSSALAAATGELDRPGAEVEPRKMWPTGLAAVGMDLKGRIPAGQQA
VTGRALGRLSDIGWGNRLRPLLSAQAADGPVPDDVLNAVVTVLADWARSPGGWASGTPDA
VARPVGVVAVPSRTRPQLVGSLAEGVAGVGRLPLLGTLAYTPHADEHIAHRSNSAQRLRA
LADSFTVPDGLAAALAATPGPVLLVDDYTDSGWTLAVGARLLRQAGADQVLPLVLALAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggacaccctggaactgcgcaccgaagccgacaccgtcctcgccgggctggtcggcgcc
cccgaggggtcggcccggctgcgggaggaccagtggcaggccgtggcggccctggtcgag
gagcgccgccgggcgctggtggtgcagcgcaccgggtgggggaagtcggcggtctatttc
gtggccaccgcgctgctgcgacggcggggggccggtcccacggtgattgtctcgccgctg
ctggcgttgatgcgcaaccaggtcgaggcggcggcgcgggcgggaattcaggcgcgcacg
atcaactcggccaatccggaggagtgggagacgatctacggtgaggtggagcgcggtgag
accgacgttctcctcgtgagtccggagcgtctcaactccgtggagttccgtgatcaggtg
ctgccgaagctcgcggcgacgaccggtcttctggtggtcgacgaggcgcactgcatctcc
gactggggccatgacttccggcccgactaccggcggctgcggacgatgctggcggagctt
ccggcgggggtgccggtgcttgccacgacggccacggcgaacgcccgggtgaccgcggat
gtggcggagcaattgggcaccggcggcaaggacgccctggtgctgcgggggccgctggac
cgggagagtctgcgcctgggggtgctggagctgccgaatgcggcgcaccggctcgcgtgg
ctgggggagcggctgggggatcttcagggttcggggatcatttacacgctgacggtcgca
gcggcggaagaggtcgcggcattcctgcggcagtgcggatatccggtggcctcctacacg
gggaagaccgagaacgccgaccggttgcaggcggaggaggatctgctggcgaaccgggtg
aaggccctggtcgccacgtccgcactcggcatgggcttcgacaagccggacctcggcttc
gtggtgcacctgggttcgccctcgtcacccatcgcctattaccagcaggtggggcgcgcg
gggcgtggcgtggaccatgctgatgtcctgctgctgccggggcgggaggacgaggcgatc
tgggcgtacttcgcttcggtgggcttcccgcccgaggagcaggtacggcgcaccctggac
gtgctggggcaggcgggccgtccgttgtcgctgccggcgctggagccgttggtggatctc
cggcgttcgcgcctggagacgatgctgaaggtcctcgacgtggacggggcggtcaagcgc
gtgaagggcggctggaccgccaccgggcagccatgggcgtacgacgcggagcggtacgcc
tgggtggcgaagcagcgggccgcggagcagcaggccatgcgggactacgtggcgaccacc
ggctgccgcatggagttcctgcagcggcagctcgacgacgagaaggccgtcccgtgcggt
cgctgcgacaactgcgccggtccctggctcgatcccgccgtctcgtcctcggccctcgcg
gcggcgacgggcgagctggaccggccgggtgccgaggtcgagccccgcaagatgtggccg
acgggcctcgccgcggtcggcatggacctcaagggccgcatcccggcggggcagcaggcg
gtgaccgggcgggcgctggggaggctgtcggacatcggctggggcaaccggctgaggccg
cttctctccgcgcaggcggcggacgggcccgtcccggacgacgtgctgaacgccgtggtg
acggtgctggcggactgggcccgttcaccgggcggctgggccagcggcactcctgacgcg
gtggcccggcccgtcggcgtcgtggccgtgccgtcccgcacccgtcctcaactggtcggc
tcgctggccgagggagtggccggggtcggccgcctcccgctcctgggcaccctggcctac
accccacacgcggacgaacacatcgcgcaccgcagcaattcggcccaacggctacgcgca
ctcgcggactcgttcaccgtgcccgacggtctcgccgccgccctggccgccactccgggt
ccggtcctgctcgtcgacgactacaccgattcgggctggaccctcgcggtgggcgcccgc
ctcctgcgacaggccggagccgaccaggtcctcccgctcgtcctcgcactcgccggatag
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