Streptomyces cathayae: PYS65_05290
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Entry
PYS65_05290 CDS
T09946
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scay
Streptomyces cathayae
Brite
KEGG Orthology (KO) [BR:
scay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PYS65_05290 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scay03400
]
PYS65_05290 (ligD)
Enzymes [BR:
scay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PYS65_05290 (ligD)
DNA repair and recombination proteins [BR:
scay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PYS65_05290 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WGD39599
LinkDB
All DBs
Position
complement(1159298..1160287)
Genome browser
AA seq
329 aa
AA seq
DB search
MSDAEGVRPVRAGRRTVRIRRPGKVLFPGGEGAEEYTKGDLVDYHRAAAPFMLPHLRGRP
LMLDRRPDGLDGPTFMQKNTPESYPEWITRVAVAKEGGTVCHTVCDDTATLLYLVDQASI
TFHRWLSRAAPIGRINRPDRLVFDLDPAEDDFGTVREAARLLGELLDELKLPTALMTTGS
RGLHVIVPLNGDDAFDDVRAFAREVADTLADAHPDRLTTAARKKERGDRLYLDVQRNAYA
QTAVAPGSVRALPGAPVAAPVSWDQLDDPKLHARRWTVADAVEQLRTDPWAGLPRRGRAL
GPARRRLAALRGGPARPDDRTRSVTAAIG
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacgccgagggggtgcggccggtacgggccggccgtcgcaccgtgcggatccgt
cggccggggaaggtgctctttcccggcggtgagggcgccgaggagtacaccaagggcgac
ctcgtcgactaccaccgggccgccgccccgttcatgctgccgcacctgcggggccgcccg
ctgatgctggaccggcgcccggacggcctcgacgggcccacgttcatgcagaagaacacc
cccgagagctacccggaatggatcacccgcgtcgcggtcgccaaggagggcggcacggtg
tgccacaccgtgtgcgacgacacggcgaccctgctgtacctcgtcgaccaggcgagcatc
accttccaccgctggctctcccgggccgccccgatcggacggatcaaccgtccggaccgg
ctggtcttcgacctcgatcccgccgaggacgacttcgggacggtgcgggaggcggcgcgg
ctgctgggggagctgctggacgagctgaagctgcccacggcgctgatgaccaccggctcc
cggggcctccatgtgatcgtgccgctgaacggtgacgacgcgttcgacgacgtgcgcgcc
ttcgcccgcgaggtcgccgacaccctcgccgacgcccaccccgaccggctcaccaccgcc
gcgcgcaagaaggagcgcggcgaccggctctacctggacgtgcagcgcaacgcctacgcg
cagaccgcggtcgcgcccggctccgtccgggccctgcccggcgcccccgtcgcggccccc
gtctcctgggaccagctggacgatccgaagctgcacgcccgccgctggaccgtcgccgac
gccgtcgaacagctgcggaccgacccctgggccggtctgccgcgccggggccgcgccctg
gggccggcccgccggcggctggccgcactgcggggcggcccggcccggccggacgaccgg
acacggagcgtgaccgcggcaatcggttga
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