Streptomyces cathayae: PYS65_21420
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Entry
PYS65_21420 CDS
T09946
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scay
Streptomyces cathayae
Pathway
scay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PYS65_21420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scay03400
]
PYS65_21420 (mfd)
Enzymes [BR:
scay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PYS65_21420 (mfd)
DNA repair and recombination proteins [BR:
scay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PYS65_21420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WGD42490
LinkDB
All DBs
Position
4661914..4665447
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAIAAAADGNRMHVDLVGPPAARPFAVAALARDTGRTVLAVTA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDL
ETGPVSVVVAPVRSVLQPQVKGLGELEPVALRTGQTADLNETVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIADHGLWAPPCRELL
LTDEVRERARVLAEQHPELGELLGRIAEGIAVEGMESLAPVLVDDMELLLDVLPEGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEELDNDTLKLGMHAPETYRGDTARALADTKGWLADGWRTVFVTEGHGPAS
RTVEVLGGEGIAARLEADLGAIAPSVVHVACGGIDHGFVDPALRLAVLTETDLTGQKASG
REGARMPVRRRKTIDPLTLEPGDHIVHEQHGVGRYVEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGGDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFGDRYAQFPVNVRALSRFQTDTEAKA
VLEGLKDGSVDVVIGTHRLFSSETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSESALEQVVVDFWEKKYDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRRQLESGE
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDVKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGNTIRFAPVELRESQELRLKRLYPGTVLKPAA
HQALVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggacgccgtcgtcaaggacaccgccctcgcggaagcgatc
gcggcggccgccgacggcaaccggatgcacgtcgacctggtcggccccccggccgcccgc
cccttcgcggtcgcggccctggcccgggacaccggccgtaccgtgctggccgtgacggcg
accggccgtgaggcggaggacctggcggcggccctgcgctccctcctcccgccggagggg
gtcgtggagtacccgtcctgggagacgctgccgcacgagcggctcagcccccgcagcgac
accgtcggacgccgcctggcggtcctgcgccggctggcccacccccggccggacgacctc
gagaccggccccgtctcggtcgtcgtcgcgcccgtgcgttccgtgctccagccgcaggtc
aaagggctgggcgaactggagcccgtcgcgctgcggacgggacagaccgccgatctgaac
gagaccgtcgaggcgctcgccgccgccgcgtacgcgcgggtggaactggtcgagaagcgc
ggcgagttcgcggtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggagatcgccgaccacggcctgtgggccccgccctgccgggagctgctg
ctcaccgacgaggtgcgggagcgcgcgcgggtcctcgccgaacagcaccccgagctgggc
gagctgctcggccggatcgccgaggggatcgcggtcgagggcatggagtccctggccccc
gtcctcgtcgacgacatggagctgctgctggacgtgctgcccgagggcgccatggccgtc
gtctgcgacccggagcgggtgcgcacgcgggccgccgacctggtggcgacctcgcaggag
ttcctgcaggcctcctgggcggccaccgccggcggcggggaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgcggacgtccgcgaccgggcgcgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacgaggaactggacaacgacaccctcaagctc
ggcatgcacgcccccgagacctaccgcggggacaccgcgcgggcgctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtgttcgtcaccgagggccacggcccggcctcc
cgcacggtggaggtgctgggcggcgagggcatcgcggcccggctggaggcggacctcggc
gcgatcgccccgtccgtggtgcacgtcgcctgcggcggcatcgaccacggcttcgtcgac
ccggcgctcaggctcgccgtgctcaccgagaccgacctgaccggccagaaggcgtccggc
cgcgagggcgcccggatgccggtccggcgccgcaagaccatcgacccgctcaccctggag
ccgggcgaccacatcgtccacgagcagcacggcgtgggccgctacgtcgagatggtgcag
cgcaccgtgcagggcgcgacccgcgagtacctggtggtggagtacgcccccgccaagcgc
ggccagcccggtgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcacccaccttgcaccggctcggcggcgccgactggaccaagacgaag
gcgcgggcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctgtacagcgcg
cgcatggcggcccccgggcacgccttcggcggggacacgccctggcagcgcgagctggag
gacgccttcccgtacgcggagacgcccgaccagctgaccacgatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtgcgcgccgcgttcaaggcggtccaggacggcaagcaggtcgccgtg
ctcgtccccaccacgctgctggtgcagcagcacttcgggacgttcggcgaccggtacgcg
cagttcccggtgaacgtgcgggcgctgtcccggttccagaccgacaccgaggcgaaggcc
gtcctggagggcctgaaggacggctcggtcgacgtcgtcatcggcacccaccggctgttc
tcctccgagaccaggttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtcgacgtgctgaccatg
tcggccacccccatcccgcgcaccctggagatggcggtcaccggcatccgtgagatgtcg
acgatcaccacgccgccggaggagcgccacccggtgctcaccttcgtcggcccctacgag
gagaagcagatcggtgcggccgtccgccgtgaactgctgcgcgaggggcaggtcttctac
atccacaaccgggtggagtcgatcgaccgcgcggcggcccggctgcgggacatcgtgccc
gaggcgcggatcgcgaccgcgcacgggcagatgtcggagtcggcgctggagcaggtcgtc
gtcgacttctgggagaagaagtacgacgtactggtgtcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctcagc
cagctgcaccagctgcgcggccgggtcggccggagccgggagcgcggatacgcgtacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcggctcgcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggaaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacatccggatggtcggcgaggccgtcgcggactaccggcgccagctggagagcggggag
atcgaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcggctgcgcctgcaggcgtaccgggcgatcgcctccgcg
aactcggaggaggacgtcaaggcggtgcgcgaggaactcgtcgaccgctacggcaagttg
ccggagccggtggagaacctgctgctggtggcgggcctgcgcatgctggcgcgcgcgtgc
ggcgtcggggagatcgtcctgcagggcaacaccatccggttcgccccggtggagttgcgc
gagtcccaggagctgcgcctcaagcggctctaccccggcacggtcctcaagccggccgcc
caccaggcgctggtgccccggccgaagacggcgaaggtgggcggaaagccgctggtcggc
cgggagttgctggcgtgggtcggggagttcctgacctcggtcctggggtcgtga
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