Sellimonas catena: ACI3DN_00365
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Entry
ACI3DN_00365 CDS
T10804
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
scaz Sellimonas catena
Pathway
scaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACI3DN_00365 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scaz03019
]
ACI3DN_00365 (rnr)
03016 Transfer RNA biogenesis [BR:
scaz03016
]
ACI3DN_00365 (rnr)
Enzymes [BR:
scaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACI3DN_00365 (rnr)
Messenger RNA biogenesis [BR:
scaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACI3DN_00365 (rnr)
Transfer RNA biogenesis [BR:
scaz03016
]
Prokaryotic type
tRNA degradation factors
ACI3DN_00365 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
VTT_dom
OB_Dis3
ANAPC2
Motif
Other DBs
NCBI-ProteinID:
XKQ71804
LinkDB
All DBs
Position
complement(72344..74482)
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AA seq
712 aa
AA seq
DB search
MERQYEKRKKMVYQFICDDFYVPMKMKEMASVLQVKKEERQELKEILDALESEGKIHKTQ
KGNYVKGQGNRLTGIYQAHARGFGFVSIEGSDDDVFIPEEESGGALQGDEVEIQITRGAG
PKTGQRQEGKVIKILKRGMSRIVGYYQKNKSFGFVLPDNQKFLQDVFVPEEKSKGAVTGH
KVVVKLTSYGGDGKKPEGEVVEILGHVNDPGTDVLSIAMSYELPIEFPEKVMNQAERVAK
PVSEADRFGRRDLRDVRMVTIDGEDAKDLDDAVSLEVRDGSFFLGVHIADVTNYVQENSA
LDREAKKRGTSVYLADRVIPMLPHTLSNGICSLNAGEDRLALSCLMKIDENGTIVDHEIC
ESVIRVDRRMTYTAVKQILEDEDEEQCRKYEEFIPMFREMARLSSILREKRHRRGAVDFD
FPETKVILDEQGRPVELKAYERNTATKLIEDFMLAANETVAEDFFWREIPFVYRIHEAPD
EEKIRKLAIFLHNFGYTMHIGNHEVHPKEIQKLLAKVEGKPEEPMIARLALRSMKQAKYT
PENEGHFGLAASCYTHFTSPIRRYPDLQIHRIIKETLRGRMDEERIRHYQSILEEVTKHA
SETERRAEEAERETVKLKKVQYMKNFIGEEYEGVISGITKWGMYVELPNTIEGLIHVVNM
TDDHYEYIEDRYEMQGIHTGKTYRLGQKVCVRVMAANELQRTIDFELGKEGD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggaaagacaatatgagaaaagaaagaaaatggtataccagttcatctgtgacgatttc
tatgtcccgatgaagatgaaagaaatggcctccgtccttcaggtgaaaaaggaagagagg
caggagttaaaagaaattctggatgctctggaatccgaaggaaagatccacaagacccag
aaaggaaactatgtaaaaggtcaggggaacaggctgaccggaatctatcaggcccatgcc
agaggatttggtttcgtatccatcgagggatcggatgacgatgtttttatcccggaagag
gaatccggcggtgccctgcagggagacgaagtggaaatccagatcacaagaggtgcagga
ccaaagacaggacagcggcaggaagggaaagtcatcaagatcctgaaacgcgggatgtcc
cggatcgtcggctattatcagaaaaataaatcattcggatttgttcttccggataatcag
aagtttttacaggatgtgtttgtgcctgaggaaaaatcaaaaggagcggtgaccggacac
aaggtcgttgtaaagctcacttcctacggcggagacgggaaaaagccggaaggtgaagtc
gtggagattctcggacatgttaacgatccgggaaccgatgtgctgagcatcgccatgtcc
tacgaacttccgattgaatttccggagaaggtaatgaaccaggcggagcgtgtggcaaag
cctgtcagcgaagcagaccgctttggaagaagagatctgagggatgtccggatggtgacg
atcgacggcgaggacgccaaggatctggacgacgcggtttccctggaagtacgggacgga
agtttttttctgggcgttcacatcgcggatgtgaccaattatgtgcaggaaaacagtgcc
ctggaccgggaagcaaaaaaacgcgggacaagcgtttatctggcggatcgtgtgattcca
atgcttccgcacaccctttccaacggaatctgttccctaaacgcgggagaggaccggctg
gcgctgagctgcctgatgaagattgatgaaaacggtacgatcgtggaccatgagatctgc
gagagcgtgatacgggttgaccgccgtatgacatatacagcggtgaaacagattctggaa
gacgaagatgaagaacagtgccggaaatatgaggaattcattccgatgtttcgggagatg
gcaaggctttcctccattttgagagaaaagcgccacagacggggggcggtggactttgat
ttcccggaaacgaaggtgattctggatgagcagggacgcccggtcgagttgaaagcgtat
gagagaaatacggcgacaaagctgatcgaagatttcatgcttgcggccaacgagacagtg
gcggaagatttcttctggagagagattccgtttgtctaccggattcatgaagcgccggat
gaggagaagatccgcaaacttgcgattttcctccacaatttcggctatacgatgcatatc
ggcaatcatgaagtgcatccaaaagagatccagaagctccttgccaaagtagaagggaag
ccggaggagccgatgattgcaagactggcacttcgctcgatgaaacaggcaaaatatacg
ccggaaaatgaaggacattttggacttgcggcatcctgctatactcatttcacttccccg
atccggcgttatccggaccttcagatccacaggatcatcaaggagacgcttcgcggccgg
atggatgaagagcggatccggcattatcagtcgattctcgaggaagtgacaaagcacgca
agcgagaccgaacgccgggcagaagaggctgagcgggagacggtcaaactgaaaaaagta
cagtatatgaaaaatttcatcggtgaagagtacgaaggtgtgatctccggtatcaccaag
tggggcatgtatgtggaacttccaaataccatcgagggactgatccatgtagtgaatatg
acggatgatcattatgagtatatcgaagaccgctacgagatgcagggcatccacaccgga
aagacttaccggcttggacagaaagtatgcgtccgtgtcatggcggcaaacgagcttcaa
aggacaatcgactttgagcttggaaaggaaggggactag
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