Sellimonas catena: ACI3DN_04125
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Entry
ACI3DN_04125 CDS
T10804
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
scaz Sellimonas catena
Brite
KEGG Orthology (KO) [BR:
scaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scaz03009
]
ACI3DN_04125 (rlmD)
Enzymes [BR:
scaz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACI3DN_04125 (rlmD)
Ribosome biogenesis [BR:
scaz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACI3DN_04125 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
MTS
Methyltransf_15
Methyltransf_25
Methyltransf_4
PrmA
TRM5-TYW2_MTfase
UPF0020
N6_N4_Mtase
Methyltransf_12
Methyltransf_11
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
XKQ72496
LinkDB
All DBs
Position
complement(797070..798227)
Genome browser
AA seq
385 aa
AA seq
DB search
MERQEYTCSLQQKGCGGCPLLSLPYEEQLRKKQKAMKKLMGNLGKVRPVIGMENPWHYRN
KAISTFAEGPGRQLISGIYARGSHYVIPVKTCLLHHPALDEAVRAVRKAARLCKYKPYDE
DRKTGLIRHVLVRHSLLTDEVLVVLITASPILPGAKAFVKKVRELCPNVTTIVQNINARS
TSAVLGFSEKILYGKGYIVDELCGIRFRIAASSFYQINPVQTEILYRTAIEAAGLDGTRT
VLDAYCGVGTIGLAAAPHAKHVLGVEKNGSAVRCAIQNAKDNGIQNARFLNEDATKAIQK
MAARGEKVDVVFMDPPRAGSTPEFLDAVSRMSPEKLVYISCNPETQKRDLEILKKKGWGV
RMIQPVDLFPHTEHVENIVVLGRKQ
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggaaagacaggaatacacatgcagtctgcagcagaaagggtgcggaggctgcccgctt
ctttcgctgccctatgaggagcagctgcggaaaaaacagaaagcgatgaaaaagctgatg
gggaatttgggcaaggtgcgcccggtgatcgggatggagaatccatggcattatcggaat
aaagcgatttctaccttcgcggaggggccggggcgacagttgatcagcggaatttatgcc
cgcggaagccactatgtgattccggtcaaaacatgccttctgcatcatccggcactggat
gaggccgtgcgcgcagtacggaaagcggcaagactctgtaaatacaagccgtacgatgag
gacagaaagaccggactgatccgccatgtactcgtccgccacagccttctgacagatgaa
gtgctggtggtacttattacagcttccccgattcttccgggtgcaaaggcctttgtcaaa
aaggtacgggaactctgcccgaacgtcacgaccattgtccagaatatcaatgcaagatcc
accagtgcagttcttggattttccgagaagattctgtatggaaaagggtatattgtcgat
gaattgtgcggaatccgtttccggattgctgcatccagcttttaccagatcaatccggtt
cagacggaaatcctgtaccggacagctatcgaggcggccgggcttgacggtacccggact
gttctggacgcctactgcggagtcgggaccatcggacttgcggcggctcctcacgcaaag
catgtcctgggagtcgagaaaaacggaagtgccgtcagatgcgctattcagaatgcaaaa
gacaacggaattcagaatgcccgttttctgaacgaagatgcaaccaaggctattcagaag
atggcggcaagaggtgaaaaggtagatgtcgtatttatggatccgccgcgggcgggcagc
acaccggaatttctggatgctgtcagccgtatgagcccggaaaagctcgtctacatttcc
tgcaatccggaaacccagaagcgggatctggagatcctgaagaaaaaaggatggggagtc
cggatgattcagccggtggatttatttccacatacggagcatgtagaaaacattgtggtt
ttgggacggaaacagtaa
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