Streptomyces scabiei: SCAB_11651
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Entry
SCAB_11651 CDS
T01187
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
scb
Streptomyces scabiei
Pathway
scb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SCAB_11651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scb03400
]
SCAB_11651
Enzymes [BR:
scb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SCAB_11651
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SCAB_11651
DNA repair and recombination proteins [BR:
scb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SCAB_11651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
Zn_ribbon_8
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
CBG68333
UniProt:
C9Z529
LinkDB
All DBs
Position
complement(1308762..1309631)
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AA seq
289 aa
AA seq
DB search
MPELPEVEALRDFLVGSLVGHEAVRVLPVAISVLKTYDPPVSAFEGREITDVRRHGKFLD
IEADGGELHLVTHLARAGWLQWKDRLPDGPPRPGGRNPLALRVALETGEGFDLTEAGTQK
RLAVYVVRDPAQVPGIARLGPDPLADEFDVTRFAGLLAGERRQIKGALRDQSLIAGIGNA
YSDEILHAARMSPFRLTSSLKPEEIRHLHEALRTTLTEAVERSRGLAAGRLKAEKKSGLR
VHGRAGEPCPVCGDTVREVSFSDSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgcccgaagtcgaagcgctccgggacttcctggtggggagcctcgtcggg
cacgaggccgtgcgcgtcctgcccgtggcgatcagcgtgctcaagacgtacgacccaccc
gtgagcgcgttcgaggggcgggagatcacggacgtacggcgccacggcaagttcctcgac
atcgaggcggacgggggagagctgcacctcgtcacccatctggcgcgcgccgggtggctg
cagtggaaggaccggctgccggacggcccgccgcggccgggcggcaggaaccccctggcc
ctgcgtgtcgccctggagaccggcgagggcttcgacctcaccgaggccggcacgcagaag
cggctggcggtgtacgtcgtacgggacccggcgcaggtccccggcatcgcgaggctcggt
ccggaccccctcgccgacgagttcgacgtgacccggttcgccgggctgctggcgggggag
cggcggcagatcaagggcgcgttgcgcgaccagagcctgatcgccgggatcgggaacgcg
tacagcgacgagatcctgcacgccgcgcggatgtcgcccttccggctgacctcgtccctg
aagccggaggagatccggcatctccacgaggcgctgcgcaccacgctgaccgaggccgtg
gagcgctcccgggggcttgcggcgggaaggctgaaggcggagaagaagagcgggctgcgc
gtgcacggccgggccggggagccctgcccggtgtgcggtgacaccgtccgggaggtctcc
ttcagcgattcgtcgctccagtactgcccgacgtgtcagacgggcggcaagccgctcgcc
gaccgacggctgtcacggttgctcaagtag
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