Streptomyces scabiei: SCAB_25321
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Entry
SCAB_25321 CDS
T01187
Symbol
truB
Name
(GenBank) putative tRNA pseudouridine synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
scb
Streptomyces scabiei
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scb03016
]
SCAB_25321 (truB)
Enzymes [BR:
scb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SCAB_25321 (truB)
Transfer RNA biogenesis [BR:
scb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SCAB_25321 (truB)
Prokaryotic type
SCAB_25321 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
PseudoU_synth_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
CBG69639
UniProt:
C9Z247
LinkDB
All DBs
Position
complement(2882203..2883117)
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AA seq
304 aa
AA seq
DB search
MTQQRQKNTTPDGLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVE
KATKLLGHLALTEKEYLGTVRLGQTTLTDDAEGEITASVDASKVTRDAVDAGVAELTGRI
MQVPSKVSAIKIDGVRSYKRARDGEDFEIPARPVTISSFAVYDVREAVAEDGTPVLDLVV
SVVCSSGTYIRALARDLGAGLGVGGHLTALRRTRVGPYKLDSARTLDQLQQELTVMPVAE
AADAAFPRWDVDDKRARLLLNGVRLEMPEEYAERGAVAVFDPAGRFLALVESQKGKARSL
AVFG
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcagcgccagaagaacaccacgcccgacggccttgtcatcgtcgacaagccg
tcgggcttcacttcgcacgacgtcgtcgcgaagatgcgcggcatcgcccggacccgccgg
gtcgggcacgcggggacgctcgacccgatggccaccggagtgctcgtcctgggggtggag
aaggcgaccaagctgctcggtcacctcgcgctcaccgagaaggagtacctcgggaccgtc
cggctcgggcagaccacgctcaccgacgacgccgagggcgagatcacggcgtcggtcgac
gcgtcgaaggtcacccgggacgcggtcgacgccggtgtggccgaactgaccggccggatc
atgcaggtgccgtccaaggtcagcgccatcaagatcgacggcgtgcggtcgtacaagcgg
gcccgggacggcgaggacttcgagattcccgcccggcccgtcaccatctcctccttcgcc
gtgtacgacgtccgtgaggccgtcgccgaggacggcacccccgtcctcgacctggtggtg
tcggtggtgtgctcctccggcacgtacatccgcgccctcgcccgcgacctgggcgccgga
ctcggcgtcggcggccacctcaccgcgctgcgccggacccgtgtggggccgtacaagctg
gactccgcgcggaccctggaccagctccagcaggagctgaccgtgatgccggtggccgag
gccgccgacgccgcgttcccccgctgggacgtggacgacaagcgggcgcgcctgctgttg
aacggggtgcgcctggagatgcccgaggagtacgccgagcgcggggccgtcgccgtcttc
gaccccgccggccgcttccttgccctggtggagagccagaagggcaaggccaggagcctg
gccgtcttcggctga
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