Streptomyces scabiei: SCAB_28931
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Entry
SCAB_28931 CDS
T01187
Symbol
rho
Name
(GenBank) transcription terminator factor (fragment)
KO
K03628
transcription termination factor Rho
Organism
scb
Streptomyces scabiei
Pathway
scb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCAB_28931 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scb03021
]
SCAB_28931 (rho)
03019 Messenger RNA biogenesis [BR:
scb03019
]
SCAB_28931 (rho)
Transcription machinery [BR:
scb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCAB_28931 (rho)
Messenger RNA biogenesis [BR:
scb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCAB_28931 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
CBG69992
UniProt:
C9Z8G5
LinkDB
All DBs
Position
complement(3294908..3297049)
Genome browser
AA seq
713 aa
AA seq
DB search
MADHRPGTVHPNRAEAGQHKRSPSQKADVRSREGPFVSDTTDLMGARVEDTAAAPATDAA
PASGAGSRRRRGTGLEGMVLAELQQVASGLGIRGTARMRKSQLIEVIKDAQAGGGAPAKA
EAATETKPKRRATSKARTGDDAAPAEKAPAKKAEAPAAKAVAQQQIEIPGQPAGGDEAPT
ERRRRRATADAGSPETVTAEAKSEPKAETPVQAEAKADAGDQGEARQGRRERGRDRGERT
DRAERGERGRRGKGDEQQGGGQQGGGQPQRDRGQQQGQQQGGGRQDRDRQRDNGPQDDDD
FDGGRRGRRGRYRDRRGRRGRDEIGTPEPQLADDDVLIPVAGILDILDNYAFIRTSGYLP
GPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKDGERREKFNALVRLDSANGMAAESGRGRP
EFNKLTPLYPQDRLRLETDPGVLTTRIIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANA
ITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLV
ELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLT
ILATALVDTGSRMDEVIFEEFKGTGNAELKLDRKLADKRIFPAVDVDASGTRKEEILLGS
DELAITWKLRRVLHALDSQQAIELLLDKMKQTKSNGEFLLQIQKTTPMPGNGD
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
ttggcggaccaccgccccggcacggtccacccgaacagggccgaagccggacagcacaaa
cggtcgccgagccagaaggccgacgtccgctccagggaaggacccttcgtgagcgacacc
accgatctgatgggcgcacgtgtcgaggacaccgctgccgcgcccgccacggacgccgcg
cctgccagcggtgccggctcccggcggcgccgcggcaccggcctagagggcatggtgctg
gccgagctgcagcaggtcgcatccggcctcggcatcaggggcaccgcgcggatgcgcaag
agccagctgatcgaggtcatcaaggacgcgcaggcgggagggggcgccccggccaaggcc
gaggcggccaccgagaccaagccgaagcgccgcgccacctccaaggcacgcacgggcgac
gacgcggccccggccgagaaggcccccgccaagaaggccgaggcgcccgccgcgaaggcc
gtggcccagcagcagatcgagatccccggccagccggccggcggggacgaggcgcccacc
gagcgccgccgacgccgtgccaccgccgacgcgggcagccccgagacggtcaccgccgag
gccaagagcgagcccaaggccgagacgccggtccaggccgaggccaaggccgacgccggt
gaccagggcgaggcccgtcagggccgccgtgagcgcggccgggaccgcggcgagcgcacc
gaccgcgcggagcgcggcgagcgcggccgccggggcaagggcgacgagcagcagggcggc
ggtcagcagggcggcggccagccgcagcgtgaccgcggccagcagcagggccagcagcag
ggcggcggtcgccaggaccgtgaccgtcagcgtgacaacggcccgcaggacgacgacgac
ttcgacggcggacgccgtggccgtcgcggccgctaccgggaccgtcgtggccgtcgcggc
cgtgacgagatcggcaccccggagccgcagctcgccgacgacgacgtcctgatccccgtc
gcgggcatcctggacatcctcgacaactacgcgttcatccggacctccggctacctgccg
ggcccgaacgacgtgtacgtgtccctcgcccaggtccgcaagaacggcctgcgcaagggt
gaccacgtcaccggtgcggtccgccagcccaaggacggcgagcgccgcgagaagttcaac
gcgctggtccgcctcgactccgcgaacggcatggccgccgaatcgggccgtggccgaccg
gagttcaacaagctgacgccgctctacccgcaggaccggctccgcctggagaccgacccg
ggggtgctcaccacccgcatcatcgacctcgtcgcgccgatcggtaagggccagcgcggt
ctgatcgtggccccgccgaagaccggcaagaccatgatcatgcaggcgatcgccaacgcg
atcacgcacaacaaccccgagtgccacctgatggtcgtcctcgtcgacgagcgtccggaa
gaggtcaccgacatgcagcggtcggtgaagggcgaggtcatctcctcgaccttcgaccgt
ccggccgaggaccacacgacggtcgccgagctggccatcgagcgtgccaagcgcctcgtc
gagctgggccacgacgtggtcgtactgctcgactcgatcacgcgtctgggccgtgcgtac
aacctggcggcgccggcctccggccgcatcctgtccggtggtgtcgactcgaccgccctg
tacccgccgaagcgcttcttcggtgcggcccgcaacatcgaggacggcggttcgctgacc
atcctcgccaccgcgctggtggacaccgggtcccgcatggacgaggtcatcttcgaggag
ttcaagggcacgggcaacgccgagctgaagctggaccggaagctcgccgacaagcggatc
ttcccggcggtggacgtcgacgcgtccggtacccgcaaggaagagatcctgctcggcagc
gacgagctcgccatcacctggaagctgcgacgtgtgctgcacgcgctcgactcccagcag
gcgatcgagctgcttctggacaagatgaagcagacgaagtcgaacggcgagttcctgctg
cagatccagaagacgacgccgatgcccggtaacggcgactag
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