Streptomyces scabiei: SCAB_44901
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Entry
SCAB_44901 CDS
T01187
Name
(GenBank) putative secreted pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
scb
Streptomyces scabiei
Pathway
scb00040
Pentose and glucuronate interconversions
scb01100
Metabolic pathways
scb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
SCAB_44901
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SCAB_44901
Enzymes [BR:
scb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
SCAB_44901
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
SVIP
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
CBG71553
UniProt:
C9Z8S8
LinkDB
All DBs
Position
complement(5035528..5036895)
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AA seq
455 aa
AA seq
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MASASPRPSHRRSLRKRRTLVVSAAAVAAAVGAGVLVMNASASPADLYHQVLPAKDGWAA
SGSGTTGGAKADAAHTFTVSTRAELVKALGSATDTTPRIIKIKGTIDANTGDSGKKVTCA
DYASGTGYSLSAYLKAFDPSTYGKKAPKGAQETAREAAETRQKKNIVFKVPANTTLVGVP
GTKAGILGGSLTVQNVKNVIIRNLTFADTQDCFPAWDPTDGSSGEWNSNYDAVTVRGATN
VWADHNTFTDAPTFDKTEATHYGRKYQVHDGALDITNGSDLVTVERNQFLNHDKTMLIGS
SDTDSSGKLRVTIHHNLWKGIVQRAPLARIGQIHLYNNVYDTTTVNGYAPKYSIDSRAKA
QVVAERNVWRIPADAKAAKLLSGDGTGSVAGTGNIVNGKATDLVAAYNTANSSKKLKTTV
NWTPALTAGLQSTVTDLLTDLTGTGTSAAGAGLLS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
gtggcctctgcctccccgcgcccgtcccaccgccggtccctccgcaagcgccggaccctc
gtggtctccgccgccgccgtggccgccgcggtcggcgcaggcgtcctcgtgatgaacgcc
agtgccagtcccgccgacctgtaccaccaggtgctgcccgccaaggacggctgggcggcg
tccggctccggtacgaccggcggcgcgaaggccgacgcggcgcacaccttcacggtgtcc
acccgggcggagctggtgaaggcgctgggctccgccaccgacaccaccccccggatcatc
aagatcaagggcacgatcgacgccaacaccggcgactccggcaagaaggtgacctgcgcg
gactacgcctccggcacgggttactcgctctccgcctacctgaaggcgttcgacccgtcg
acctacggcaagaaggctccgaagggcgcacaggagaccgcgcgcgaagccgccgagacc
aggcagaagaagaacatcgtcttcaaggtgcccgccaacaccaccctcgtgggcgtcccc
ggcaccaaggcgggcatcctcggcggcagcctgacggtgcagaacgtcaagaacgtcatc
atccgcaacctcaccttcgcggacacccaggactgcttcccggcctgggacccgaccgac
ggctcgtccggcgagtggaactccaactacgacgccgtcacggtgcgcggcgcgaccaac
gtctgggcagaccacaacacgttcacggacgcgccgaccttcgacaagaccgaggcgacc
cactacggccgcaagtaccaggtccacgacggcgccctcgacatcaccaacggctcggac
ctggtgaccgtcgagcgcaaccagttcctgaaccacgacaagacgatgctgatcggctcc
agcgacaccgactccagcggcaagctgcgcgtgacgatccaccacaacctgtggaagggg
atcgtgcagcgggcacccctggcccgcatcggccagatccacctctacaacaacgtgtac
gacacgaccacggtcaacggctacgcccccaagtacagcatcgactcccgcgccaaggcc
caggtcgtcgcggaacgcaacgtctggaggatcccggccgacgcgaaggccgcgaagctg
ctgagcggcgacggcacgggctcggtcgccggcaccggcaacatcgtcaacggcaaggcc
accgacctcgtcgccgcgtacaacaccgcgaactcgtcgaagaagctgaagaccacggtc
aactggaccccggccctcaccgccggcctccagagcacggtcacggacctgctgaccgac
ctgacgggtacggggacgtcggccgcgggcgccggcctcctgtcgtag
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