Streptomyces scabiei: SCAB_47281
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Entry
SCAB_47281 CDS
T01187
Name
(GenBank) SigH-like stress response sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
scb
Streptomyces scabiei
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scb03021
]
SCAB_47281
Transcription machinery [BR:
scb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SCAB_47281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_Crp_2
Sigma70_ECF
HTH_3
MarR
HTH_24
HTH_28
HTH_31
Motif
Other DBs
NCBI-ProteinID:
CBG71781
UniProt:
C9ZDK7
LinkDB
All DBs
Position
complement(5304475..5305395)
Genome browser
AA seq
306 aa
AA seq
DB search
MSADQGSSKVLTLDKSETAPDAIQAPQDLQALEDLPGPQAPPVTDLPAVSASANIDTRTL
SRSLFLRLAALDENSPERAYVRDTLIELNLPLVRYAAARFRSRNEPMEDIVQVGTIGLIK
AIDRFDCERGVEFPTFAMPTVVGEIKRFFRDTSWSVRVPRRLQELRLALTKASDELSQKL
DRSPTVTELAAVLGVSEEDVVDGLAVGNAYTASSLDSPAPEDDGGEGSLADRLGYEDTAL
EGVEYRESLKPLLAKLPPRERRIIMLRFFANMTQSQIGEEVGISQMHVSRLLTRTLAQLR
EGLISD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaccagggcagctcgaaggtgctcacgctcgacaagagcgaaaccgcgccc
gacgctatccaggcccctcaggaccttcaggcgcttgaggaccttcccggtccccaggct
ccgccggtgactgaccttccggccgtgtcggcctcggcgaacatcgacacccgcaccctg
tcccgctccctgttcctgcggctggccgcactggacgagaacagccccgagcgtgcctat
gtccgggacaccctcatcgagctcaacctcccgctggtgcgttacgccgccgcccgtttc
cggtcgcgcaacgagccgatggaggacatcgtccaggtcggcacaatcggcctgatcaag
gcgatcgaccgcttcgactgcgaacggggcgtggagttcccgacgttcgcgatgccgacg
gtcgtgggcgagatcaagcggttcttccgcgacacctcgtggtcggtgcgggttccgcgc
cggctgcaggagctgcgcctggccctcaccaaggccagcgacgagctgtcgcagaagctc
gaccgctccccgacggtcaccgaactcgccgccgtactgggcgtgtcggaggaggacgtc
gtcgacggcctcgcggtcggcaacgcctacacggcgtcgtcactggactcgccggccccc
gaggacgacggcggcgagggctccctcgcggaccgtctcggctacgaggacacggcgctg
gagggcgtggagtaccgcgagtccctcaagccgctgctggccaagctgccgccgcgcgag
cgccggatcatcatgctccggttcttcgcgaacatgacgcagtcccagatcggcgaggag
gtcggcatctcccagatgcacgtctcccgcctcctcacccggaccctggcccagctccgc
gagggcctgatctccgactga
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