Streptomyces scabiei: SCAB_82421
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Entry
SCAB_82421 CDS
T01187
Name
(GenBank) putative secreted pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
scb
Streptomyces scabiei
Pathway
scb00040
Pentose and glucuronate interconversions
scb01100
Metabolic pathways
scb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
SCAB_82421
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SCAB_82421
Enzymes [BR:
scb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
SCAB_82421
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
CBG75196
UniProt:
C9YU67
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All DBs
Position
complement(9145178..9146233)
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AA seq
351 aa
AA seq
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MLVDQKSELSSSTWPISISLKGRTRMRTVPPHARPQRTASLVAAAAALATAAVLVLPHAA
TAAETSPVGFGAGTTGGGSAGPATVSTLAAFRTAVAGDNAKVVRVSGLIALSGQVDIGSN
TTVLGVGPSSGFTGGGLRIKERTNVVVRNLNISKPVAPADGITVQESTKVWIDHNSFSAD
RTHDKDHYDGLLDVNHGSDRVTVSWNTFKEHFKGSLVGHSDKNASEDTGRLRVTYHHNHF
GNVYSRIPSLRFGTGHFYNNYVDGAETACHSRMGAQMLVENNVFRNTGVAVTTNRSSDVD
GFANLRGNDLGGAATEISRVGTFTAPPYGYTAEPASSVVSSVTSGAGAGKL
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtcgatcagaagagtgaactcagttcttctacatggcccatcagcatctccctg
aagggacgcacccgcatgcgtaccgtccccccacatgcacggccgcaaagaaccgcctcc
ctggtggccgcggccgccgccctggcgaccgccgccgtcctcgtcctgccgcacgcggcg
acggcggcggagacctccccggtcggcttcggcgccgggaccaccggcggcggcagcgcc
ggccccgccaccgtctcgacgctcgccgcgttccggaccgccgtcgccggcgacaacgcc
aaggtcgtccgggtgagcggcctgatcgcactgagcggtcaggtggacatcggctcgaac
acgacggtcctcggcgtgggtccgtcgtccgggttcaccggcggcggcctgcggatcaag
gagcggaccaacgtcgtcgtccgcaacctgaacatcagcaagccggtcgcccccgccgac
gggatcacggtccaggagtccacgaaggtgtggatcgaccacaactccttctcggcggac
cgcacgcacgacaaggaccactacgacggcctgctggacgtcaaccacggctcggaccgg
gtgacggtgtcctggaacaccttcaaggagcacttcaagggctccctggtcggtcacagc
gacaagaacgcctccgaggacaccggccgtctgagggtgacgtaccaccacaaccacttc
ggcaacgtgtactcgcgcatccccagcctgcgcttcggcaccgggcacttctacaacaac
tacgtggacggcgccgagaccgcctgccactcgcgcatgggcgcccagatgctcgtggag
aacaacgtcttccgcaacacgggagtcgccgtcaccacgaaccgcagcagcgacgtggac
ggcttcgcgaacctgcgcggcaacgacctcggtggagccgccaccgagatctcccgggtg
ggcaccttcaccgccccgccctacggctacaccgccgagcccgcctcctccgtcgtctcc
tcggtgacgtcgggcgcgggcgccgggaagctctga
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