Streptomyces scabiei: SCAB_88501
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Entry
SCAB_88501 CDS
T01187
Name
(GenBank) putative secreted protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
scb
Streptomyces scabiei
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
SCAB_88501
Enzymes [BR:
scb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
SCAB_88501
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
UCR_Fe-S_N
Motif
Other DBs
NCBI-ProteinID:
CBG75786
UniProt:
C9Z6B6
LinkDB
All DBs
Position
9866428..9868134
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AA seq
568 aa
AA seq
DB search
MNGTTMSAHGRRRPTRRDVLLRTAAGGLVLGGGAAVCGPLLSTADAAGSTFGHRDDGRAH
VIDTGAGLVFKVDHRTGDLTSLVYGGTEYQGYGNRNSHVETGLGASSVSIRGTADTVLVT
VVHGTMHHYYAARRGENNVYMWTNKADASITATRYIVRVRPGLFPNDDPDSWDARTDTLI
EAQDIRRRPNGTTRSKHYSNQRVIDYSHVGWSDGKVGMWMVRSNHEKASGGPFYRSLMRH
HYEDGAGLYEILYYGENQTEPMRFGLQGPYVLAFTDGGAPARALAHDAIDTSWADGLGLV
GWVGRRGRGRVAGVGIGGRAEGTAYTVGFANPDAQYWAKADPATGRFQSPYMLPGAYELT
VYKDELAVHTTSVTVTAGRTTALHTLKITADPGQRPAIWRIGDWSGTPRGFANASLMTTM
HPSDARARPWTQGVHTIGSSSAADFPCYQWADVDNGRKIRFRLTREQLASGHTLNIGITT
AFAKGRPRIRVNDWVSTVPVPAEEPTTRSLTVGSYRGNNHTYSYAIPASAWVRSADAHQE
LTIDIVSGSGGTAFLSPGVSYDVVELVP
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaaccaccatgtccgcacacggtcgtcggcgtccgacccgccgcgatgtcctg
ctcagaaccgccgccggcggactcgtcctcggcggtggcgccgcggtctgcggcccgttg
ctctccaccgccgacgcggcgggaagcaccttcggacaccgcgacgacgggcgcgcccac
gtcatcgacaccggcgccggcctcgtgttcaaggtcgaccaccgcaccggcgacctgacc
tccctggtatacgggggcaccgagtaccagggctacggcaaccgcaactcgcacgtcgaa
accggtctgggcgcctcgtcggtgagcatccgcgggaccgccgacaccgtcctggtcacc
gtcgtccacggcaccatgcaccactactacgccgcccgccggggcgagaacaacgtctac
atgtggacgaacaaggcggacgcctccatcaccgccacccgctacatcgtccgcgtgcgg
cccggcctgttccccaacgacgaccccgactcctgggacgcccgcaccgacaccctgatc
gaggcacaggacatccgccgccggcccaacggcaccacccgctccaagcactactccaac
cagcgcgtcatcgactacagccacgtcggctggagcgacggcaaggtcggtatgtggatg
gtccgcagcaatcacgagaaggcgtccggcggaccgttctaccgctcgctcatgcgtcac
cactacgaggacggcgccggcctgtacgagatcctctactacggcgagaaccagaccgag
ccgatgcgcttcggcctccagggcccgtacgtcctcgccttcaccgacggcggtgcgccc
gcccgcgcgctggcccacgacgccatcgacacctcgtgggcggacggtctgggcctggtc
ggctgggtcggccgccgtggccgcgggcgggtcgccggtgtcggcatcggcggccgcgcc
gagggcaccgcctacacggtcggcttcgccaaccccgacgcccagtactgggcgaaggcc
gacccggccaccggccgtttccagtcgccgtacatgctgccgggcgcgtacgagctcacc
gtttacaaggacgaactcgccgtgcacacgacgtccgtcaccgtgacggccgggcgcacg
acggccctgcacaccttgaagatcaccgcggatccgggacagcggcccgcgatctggcgc
atcggcgactggtccggcacaccgcgcggcttcgccaacgcctccctgatgacgacgatg
cacccctccgacgcccgggccagaccgtggacgcagggtgtccacaccataggctcctcg
tccgcggcggacttcccctgctaccagtgggcggacgtcgacaacggccggaagatccgt
ttccggctcacacgggagcaactggcgtccggccacacactcaacatcggtatcaccacc
gcgttcgccaagggcaggccccggatcagggtcaacgactgggtctcgaccgtgcccgtg
cccgccgaggaacccacgacccgctccctcaccgtcggctcctaccggggaaacaaccac
acctacagctacgcgatccccgcgagtgcctgggtgaggtcggcggacgcccaccaggag
ctgacgatcgacatcgtcagcggctccggcggcaccgccttcctcagccccggagtgtcg
tacgacgtcgtcgagctggtgccctga
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