Parasphaerochaeta coccoides: Spico_0003
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Entry
Spico_0003 CDS
T01469
Name
(GenBank) DNA replication and repair protein recF
KO
K03629
DNA replication and repair protein RecF
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Spico_0003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scc03400
]
Spico_0003
DNA repair and recombination proteins [BR:
scc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Spico_0003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_15
AAA_23
AAA_21
AAA_27
DUF2813
AAA_29
ABC_tran
VapE-like_dom
NACHT
Motif
Other DBs
NCBI-ProteinID:
AEC01245
UniProt:
F4GI86
LinkDB
All DBs
Position
2895..3974
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AA seq
359 aa
AA seq
DB search
MRILSLDIHCFRNIRKASVDTDARSVMLVGENGQGKTNFLEALYVLCYGTSFRTPNLREA
VSHDGRGFSVKADFVDDSGNHHEIQVKHVQGKRSIFIDRKEIYDRKELIYTIPCIVFCHD
DIEFVRGEPEARRRFFDQTMSMYNPLFFDDSRRYRNILRQRNAALKEGRLSLVPIYDFQL
ARYGMSIQKARKAAVKEFNDIFPRMYRDVSGTDLEISVEYQPSWKMAENAEDAEEILSRA
LERDVRMQTTCSGVHRDKFIVKDADRPFSQTGSTGQLRLASLILRMAQAGFFFGKTGKEP
VLLIDDVLLELDVTRRGRFLSHIEDYSQAFFTFLPEEKYFSSLEDEKMLSYTVEGGAFR
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgagaatactttccctggacattcattgtttcaggaacatacggaaagcatcagtagac
acggatgcccgttccgttatgctcgtcggagaaaacggacaaggcaagacgaattttttg
gaagctctttatgtcctgtgctacggaacgtctttccgtactccgaacctgcgggaagcg
gtcagccacgatggcaggggtttttccgtaaaggctgatttcgtcgatgattcaggtaat
catcatgaaatacaggtgaagcatgtacagggaaagagaagtatttttattgacagaaaa
gaaatatatgataggaaagaacttatatatacaattccctgcatagtgttctgtcatgat
gacattgagtttgtccgtggagaaccggaagcccgccgccgtttctttgaccagaccatg
tccatgtacaatcctcttttcttcgatgattcccgacggtacaggaacatattgcgccag
cgcaacgctgcgttgaaggaaggcaggttgtccctcgttcccatctatgatttccaactg
gctcggtatggcatgagcatccagaaggcaagaaaggccgccgtgaaggaatttaacgac
atttttccacggatgtaccgggacgtatcaggaacagaccttgagatcagcgttgaatat
cagccttcgtggaagatggcggaaaacgccgaggatgcggaagaaatactgtcccgtgcc
ttggagagggatgtcaggatgcagacgacatgcagtggtgtccatagggacaagttcatt
gtcaaggatgctgacagacctttttcccagacaggttcaacaggacaactccgtctggcg
tccttaatcctgcggatggctcaggcaggcttctttttcggcaagactggcaaagaacct
gttcttctcatagatgatgtcttgcttgagcttgatgtgacgcgaaggggtcgttttctt
tcccatatagaggattacagccaagcgttcttcacgttccttccggaagaaaaatatttt
tcttcactggaagacgagaagatgctgtcctatactgtggaaggaggagccttccggtga
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