Parasphaerochaeta coccoides: Spico_0013
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Entry
Spico_0013 CDS
T01469
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
scc
Parasphaerochaeta coccoides
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scc03000
]
Spico_0013
Transcription factors [BR:
scc03000
]
Prokaryotic type
Helix-turn-helix
Other families
Spico_0013
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
AAA_5
Mg_chelatase
HTH_8
AAA_2
AAA
AAA_3
HTH_22
HTH_17
ATPase
AAA_7
MCM
T2SSE
PAS_8
AAA_16
DUF815
GAF
HTH_23
nSTAND6
ORF28
HTH_50
Motif
Other DBs
NCBI-ProteinID:
AEC01255
UniProt:
F4GI96
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Position
11610..13475
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AA seq
621 aa
AA seq
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MNPHTTMLQSISSEILAEKKKIFREMTKAALPHLHKLFKLFGNEKAFILLVDADSVVLEY
LYAENGSVATYVPDAGDLFSEDSAGTNAIALSLMTDSLSYVQGCEHWLEKYYDIMSVAAP
LHVNDGVVGTIALVWLKSAEQNLSLALSLVESTVYGIERESMIQNLLSAQTLVVTQQRMV
LDFVDTGLIAISKNGEIRQINQQALTIFHEKGIWEGRGIAELVNSPGNFFDLLCNTPVLE
EHDVPVHIGDIYIHVAFSTFIMKANQVDIWMIIRCREFRTVKKLMNKVSHNVAYYSFEDI
ISEADTMKEPLKLAKLASKATSNVLVTGETGTGKELLVQSIHNGGSRRGKPFVAINCGVV
SRELIRSELFGYEGGAFTGAKSTGSMGKFELADGGTLFLDEIGEMPADVQAVLLRVLQTH
QVTRVGGKYPIPVDVRVIAATNRDLEQDVRDNFFRGDLYYRLNVLSIILPPLRERGKDIQ
LLADFFVEKYVEEKDGISIKISPEVYDVFDGYPWPGNIRELENVIHRAILLSEDGIVRRH
HLPTNLQAWWNGNKEQKLIYCQADLPKIDDMKAVLVRNALKDFSGNVKKVASYLNLSRGT
VYNMMKKYGFDGDTYRDMTRK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaatccacatactactatgcttcaatcaatatcttctgaaattctagcggaaaagaaa
aagatattcagagagatgactaaggcagcccttccccatctccataaactgttcaaactt
tttgggaatgaaaaagcattcattctcttggtcgatgctgattcagtggtgcttgagtat
ctctatgcggaaaacggttccgtagcaacatacgtgcctgatgctggagacttgttctcg
gaggactctgcgggaacaaatgctatcgcgctctcattgatgactgattctctttcatat
gtacaaggatgtgaacactggcttgagaaatactatgatattatgtctgttgccgcgcct
ttacatgtaaatgatggtgtcgtgggaacaattgccttggtatggcttaaatcagcggag
caaaatctcagccttgctttatcactggttgaatcgaccgtttatggtatagaacgggaa
agcatgatacagaatcttctgagtgcccaaacgctcgtggtaacacaacagaggatggtt
cttgattttgtagataccgggctgatagccattagtaaaaacggagaaattcgtcagatt
aaccaacaagctctgaccattttccatgaaaaaggaatatgggaagggcgggggatcgca
gaactggtgaattcacctggaaatttttttgatctgctttgtaatacaccagttttggaa
gaacatgatgttcccgttcacatcggagatatctacatccatgtggcattctccacattt
atcatgaaggcgaatcaagtggatatctggatgatcatcaggtgtcgagagtttcgtact
gtgaaaaaactgatgaacaaagtgtctcataatgtggcttattattcttttgaagatata
atcagcgaagcggataccatgaaagaaccgctcaaactggccaagttagcgagtaaggca
acatcgaatgtccttgtcactggagaaacgggaacaggtaaggaacttcttgtacagagc
atccataatggcggttctcgacggggcaagccctttgttgccatcaattgcggagttgtt
tcacgagaactaattcgcagcgaactttttgggtatgaagggggagcgtttacaggagcg
aaaagtaccggcagtatgggtaagtttgagcttgcggatggaggtactttgttcttggat
gaaattggggagatgccggccgatgtccaggcggtgcttctccgtgtccttcagacgcat
caggttacacgtgtgggcggtaaatatcctattcctgtcgatgttcgtgtcatcgctgcg
acgaaccgggatcttgagcaagatgttcgcgataatttttttcggggagatttgtattat
cgactgaatgttctctccataatccttcctcctttacgggaaagaggaaaggacatacag
ttgcttgctgatttttttgtagaaaaatacgtggaagaaaaagacggtataagtataaag
atttctccggaagtctacgatgtttttgatggttatccatggccgggaaatataagggaa
ttggagaacgttattcatcgtgcgattctgctttccgaggatggtattgtcaggagacac
catcttccgacaaatcttcaagcgtggtggaatggtaacaaagagcagaaacttatttat
tgtcaggctgatttgccaaagattgatgacatgaaagctgtgctggttcggaatgctttg
aaggacttttcagggaatgtgaaaaaagtggcatcctatctgaatctctctagaggaaca
gtctataatatgatgaaaaaatatggttttgatggcgatacatatagggatatgacaagg
aaatga
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