Parasphaerochaeta coccoides: Spico_0212
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Entry
Spico_0212 CDS
T01469
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spico_0212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scc03019
]
Spico_0212
03110 Chaperones and folding catalysts [BR:
scc03110
]
Spico_0212
03029 Mitochondrial biogenesis [BR:
scc03029
]
Spico_0212
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scc04147
]
Spico_0212
Enzymes [BR:
scc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Spico_0212
Messenger RNA biogenesis [BR:
scc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Spico_0212
Chaperones and folding catalysts [BR:
scc03110
]
Heat shock proteins
HSP60 / Chaperonin
Spico_0212
Mitochondrial biogenesis [BR:
scc03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Spico_0212
Exosome [BR:
scc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Spico_0212
Exosomal proteins of other body fluids (saliva and urine)
Spico_0212
Exosomal proteins of breast cancer cells
Spico_0212
Exosomal proteins of colorectal cancer cells
Spico_0212
Exosomal proteins of bladder cancer cells
Spico_0212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
AEC01447
UniProt:
F4GKN8
LinkDB
All DBs
Position
231936..233573
Genome browser
AA seq
545 aa
AA seq
DB search
MAKQLQFNEEARRSLVAGVEKISRAVMTTLGPKGRNVLLDKKFGAPTVTKDGVSVAREIE
LEDPFENMGAQLLKEVATKTNDVAGDGTTTATVLAWSITKEGMKSVAAGVNPMGIRRGID
KAVADAIVEIKKQAKVVSSKEEISQVAAISSNNDTTIGDEIANAMEKVGQDGVITIEESK
TIETTTDFVEGMQFDRGYLSAYFANNRDTMTAVLDDPFILIVDKKISSMKDLLPVLEKVV
QAGKPLLIIAEDVDGEALATLVVNSVRGTLNVVAVKAPGFGDRRKAMLEDIAILTGGEVI
SEELGLKLENADLSQLGRAKTVKVEKENTTIINGSGKAADIKDRIAQIKVQISDTTSDYD
REKLQERLAKLSVGVAVVNVGAATEVEMKEKKLRVEDALNATRAAIEEGVIPGGGVALVQ
AAKTLEKTDLSKLPEEEQVGYKIVRRALEEPIRQIAENAGLDGSIIAEKCKNSEQGIGYD
ANAMKWVKMVDAGIIDPVKVARSALQNAASIAALILTTECAVTDIPAPEPAMPAGGGMGG
MGGMM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacagcttcagtttaatgaagaggcacgtaggtctcttgtagccggtgtcgaa
aagatttcccgcgctgtgatgacgacgcttggaccgaagggcaggaacgtcctgctggat
aaaaagttcggggctcccacagtgaccaaggacggagtatccgtcgcacgggagatagaa
ctggaggatccgtttgaaaacatgggtgcccagttgcttaaggaagtcgcgacaaagaca
aacgatgtcgctggtgacggcacgaccacggccaccgtacttgcttggtccatcaccaag
gaaggcatgaaaagcgttgccgcgggcgttaaccccatgggcatccgccggggcattgac
aaggcagtcgccgacgccatcgtggagattaagaagcaggccaaagtggtgagcagcaag
gaagagatttcccaggtcgccgcaatcagctccaacaacgacactaccatcggcgatgaa
atcgcgaacgccatggagaaggtcggacaggacggcgtcatcaccatcgaggagtccaag
accattgagacgaccactgatttcgtcgaaggcatgcagtttgatcgcggctatctgtcc
gcgtatttcgccaacaaccgtgacaccatgactgcggtgcttgatgatcctttcatcttg
attgtcgataagaagatttcctccatgaaggatttgctccctgttttggagaaggtcgtg
caggctggcaaacccctgctcatcattgcagaggatgtcgatggagaggctttggccacc
ctggtggtgaacagcgtccgtggaaccctgaacgttgtggctgtcaaggctcctggcttt
ggtgatcgccgcaaggcaatgctggaagacatcgccattctgaccggtggagaggtaatc
agtgaggaacttggcctgaaacttgagaatgctgatctttcccagctgggacgtgccaag
actgtcaaggtggagaaagagaataccacaatcatcaatggttccggcaaggctgccgac
atcaaggaccgtattgcccaaatcaaggtgcagatttccgatacgaccagcgattatgac
cgcgagaaacttcaggagagacttgccaagctgtccgttggcgttgctgttgtcaatgtt
ggagcggctaccgaggtcgagatgaaggagaaaaagctccgtgtcgaggatgccctgaac
gctacccgcgccgctattgaagaaggcgtgattcctggcggcggtgtcgccttggttcag
gctgccaaaactctggagaagactgacctttccaagcttcctgaagaggagcaggtcggt
tacaagattgtgcgccgcgcccttgaggaacctatccgccagattgcggagaatgctggt
cttgatggttcgattatcgctgagaagtgcaagaactctgagcagggcataggatatgac
gccaatgccatgaagtgggtcaagatggttgacgcagggattattgatcccgtgaaggtc
gcccgcagcgccctccagaacgccgcctcaatagcggcgctcatcctgaccaccgagtgt
gcggtcaccgacattccggctcctgagccagcaatgcccgcaggcggtggaatgggaggc
atgggcggcatgatgtaa
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