Parasphaerochaeta coccoides: Spico_0432
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Entry
Spico_0432 CDS
T01469
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spico_0432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scc03019
]
Spico_0432
03400 DNA repair and recombination proteins [BR:
scc03400
]
Spico_0432
Enzymes [BR:
scc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spico_0432
Messenger RNA biogenesis [BR:
scc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spico_0432
DNA repair and recombination proteins [BR:
scc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Spico_0432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Glyco_hydro_57
TrbI_Ftype
DEAD_2
TniB
SNF2-rel_dom
AAA_22
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AEC01660
UniProt:
F4GIF2
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All DBs
Position
complement(508680..510116)
Genome browser
AA seq
478 aa
AA seq
DB search
MEHSRLIQHMLDKSFGGIKLRPFQSLIIEDMLEAEQNDACDPGHLVILPTGGGKTLCFML
PALLMNGISIIVYPLLSLMNDQKRKMTDSPVPVFCLRGGQTYAQRDDIWRKLSHLNQAII
LTNPETLVNPHVRQRLEKLDISLFVLDEAHTLIQWGNSFRPAYHDLSQTLPTLGARHVMA
FTATSGDGMTGQLIASLFNRVPPHIVRADIDRPNIIYHVRRTLCPDREIVLLAAIAPRPL
LVFCPTRRETWRCATEIALALPHIPVRAYHAGLGRKEREETESWFISSQDAVLCATCAFG
MGVDKPNIRSVVHVRLPSTVEEYLQESGRAGRDGNTSHAWVIITGMEKPCQGYQNAFMEP
HGCIRRTVLEKMGQQGTFCSGCDICDSTYVNEAEAENDILKEILWHPLRHNPDTLSAWLR
ANEDNWNENITDHLAGDACGAMRWTPSQAKEAVRTLIHRNRIKILHFPLLNDRIVLKH
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggagcattcccgactcattcaacacatgctggacaaatctttcggcggcatcaaacta
aggccattccagagccttatcatagaagatatgcttgaggcagaacaaaacgatgcctgc
gatccggggcatctcgtcatcctgccgacaggaggaggaaaaactctctgcttcatgctg
cctgccctgctcatgaacggaatttccatcattgtctaccctctgctctccctgatgaat
gaccagaaacgcaagatgactgacagtccggttccggtattttgcctgagaggaggtcag
acatatgcccagcgtgatgacatctggcggaaactttcccatctcaaccaggcaatcatc
ctgacaaacccggaaacgctcgttaatcctcatgtccgacaacgacttgaaaagttggat
atcagtctctttgtccttgacgaggctcatactctcatacagtggggaaattccttccgt
cctgcttatcatgacctgtctcaaaccctgccaacgcttggcgcacgccatgtcatggct
ttcaccgcgacatctggagacggaatgaccggacaactcatcgccagtctttttaaccgg
gtgcctccccacattgtccgagctgacattgatagaccaaacatcatctatcatgtcaga
agaaccctatgtcctgacagggaaatagtacttcttgccgccattgccccgcgcccgctt
cttgttttctgccctacccgcagagaaacatggcgttgtgctacggaaattgcgcttgca
ctccctcatattccagtacgagcttatcatgccgggttaggaagaaaagaaagagaagaa
acagaatcatggtttatttcaagtcaggatgccgtcctttgcgcaacctgcgcctttggc
atgggggtggataaaccgaatatcaggagtgtcgtccatgtacggcttccttccactgtt
gaagaatatctccaggaatccggcagagcgggacgtgacggaaatacatcccatgcgtgg
gtcatcatcaccggaatggaaaagccatgccaaggatatcagaatgccttcatggaaccg
cacggctgcatccgccgaactgtgcttgaaaagatgggacaacaaggaactttctgttcc
ggctgtgatatctgtgatagtacatacgtgaacgaagcggaagcggagaatgatattctc
aaggaaatcttatggcatcctctgcgccacaatcccgataccttgtcggcatggctcaga
gccaatgaggacaactggaatgaaaacattacagatcaccttgcaggagacgcttgcggc
gcaatgcgctggacaccgagccaagccaaggaagccgtaagaactctcatacatagaaat
agaataaaaatcctgcattttccattgcttaatgataggatagtactgaaacactga
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