Parasphaerochaeta coccoides: Spico_0543
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Entry
Spico_0543 CDS
T01469
Name
(GenBank) RNAse Z
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
scc
Parasphaerochaeta coccoides
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scc03016
]
Spico_0543
Enzymes [BR:
scc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
Spico_0543
Transfer RNA biogenesis [BR:
scc03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
Spico_0543
Prokaryotic type
Spico_0543
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_4
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
AEC01771
UniProt:
F4GJD1
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All DBs
Position
630311..631237
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AA seq
308 aa
AA seq
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MNFEIFVLGTSGMMPLPGRFLTSALLRREGELFLFDCGEGTQVTLKMLNLKWKKINSIFI
SHMHADHVTGLPGILMLSSQVERDTPLYIYGPRKLKEYIEANRRILDMYINYEIIVIPVE
PGRIFETDEYFVEAFELNHTKPCLGYSFIEKERPGEFNPEAAATLGIPRGPLWGQLQKGN
TVTLEDGREIHPDAVMGLPRGGRKFSYVTDSLYFPAIAEHVKDADFFLCEGMFENALEAS
AVEKKHMTAVQAARIAHDAHVKKMGLFHYSPRYTDKEIKKLVEEARAVFPRTIHTRDRMC
FTIPLPQD
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgagatatttgtacttggaaccagtggcatgatgccactgcccggacgcttt
cttaccagtgcgctcctgcgcagggaaggggaactgttcctttttgattgtggagaaggt
acccaggtcacgctgaagatgctgaacctgaaatggaagaaaattaattcaatttttatt
tcacatatgcatgccgaccatgtaacaggtcttcccggcatcctgatgctttcaagtcag
gttgagagagacaccccgctgtatatctacggtccgcggaaactcaaggaatatatcgag
gcaaacagacgtatcctggacatgtatatcaattatgagatcattgtcattcctgtagag
ccaggacgcatctttgagactgatgaatattttgtcgaggcttttgagctgaaccataca
aaaccctgtcttggatattctttcatagagaaggaacgtccaggggagttcaatccggaa
gctgccgccacgctgggaattcccagagggcctctgtggggacagcttcagaaagggaat
acagtaaccctggaggatggcagggaaattcatcctgatgctgtcatggggttgccacgg
ggagggcggaagttttcctatgtgacggactctctttactttcctgcaattgccgaacat
gtgaaggatgctgatttcttcctttgtgaagggatgtttgaaaatgcgctggaagcaagc
gccgtggaaaagaaacacatgacagctgtccaagctgcccgtattgcccacgatgcccat
gtgaagaaaatgggactttttcactatagcccacggtatactgacaaggaaatcaagaag
ttggtcgaggaagcgcgcgccgttttcccgcgaacgattcatacaagggatcggatgtgc
tttaccatccctctgccacaggattag
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