Parasphaerochaeta coccoides: Spico_0676
Help
Entry
Spico_0676 CDS
T01469
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spico_0676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scc03400
]
Spico_0676
Enzymes [BR:
scc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spico_0676
DNA repair and recombination proteins [BR:
scc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Spico_0676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEC01902
UniProt:
F4GKY9
LinkDB
All DBs
Position
complement(792932..796210)
Genome browser
AA seq
1092 aa
AA seq
DB search
MTLMQLQVVTSLQSYIKSLEAYKGFVSSPDVPVYLDNLSGYPLAECIRLFARKVPGRVWV
ICSTEEAASQLLKDGFATSGDDGKTNDQKFLYLPSNGKTLYSSWEGTKREYVQLLALQSA
QKTEKGIIVTHLRAFVSPVVAFNALQEASLEIAVGKPFETEKSAEKLANGGYFRSPTTGS
PGEFSIRGEVLDIFPHGEDAPVRIYADWDVVDKISYFDPVTQQTNGSMARISVVLPDMSD
KSVTGPILPYLRENDYFFFIGDQRLESSFHALEVEAKALYRTAFHEDRSVAKPDILLVDF
PRFRAATSRSAVITDIVGRHAGASHVDIAGPRSFFGDFTMVKSELTQLFKNGWNVTIFTT
TEQQKARLAQMLNVFPQIVYVGTELSGGFSLPSRKEIVMCDHEIFGRRKQVIQRLHKIQS
SPLDSFVDLSEGDYVVHANYGVGQFIKIDRVGVSGRERDYIKIRYASDENLYVPIEQANL
IQRYIGSAGGSPALDHLGGQGWEHKKARARKSAEQLATRLQQLYARRKNARGFPFPPDTD
WQLQFEASFPYDETEDQLTCIEDIKKDMESPIVMDRLVCGDVGYGKTEIAFRAAFKAVMS
GKQVVFLAPTTILAEQHYNTFIGRLGDFPVRVGLLSRMVPRKEQSKVLKNLQAGQLDILF
GTHRVIQKDVKFSDLGLLVVDEEQRFGVKDKERIKEMRTSVDSLSLSATPIPRTLYMSLL
RIRDMSLLTTPPIARRPIRTIIQQYDPDIAEKAIRNELGRGGQVFYLHNRIETLGMVVNK
LRERMPEFAIESAHGQMNGDDLEDTMRRFIHEGIQVLVSTTIIENGIDIPNVNTIIIDRA
DMYGVSQLYQLRGRVGRSDREACAYLFYPQEEMLSEIAIRRLQTISQHTELGGGFKVAMK
DMEIRGTGNLLGREQSGQVASVGLDMFLKILDETISKMQNADDDSSREVYLELDYSGFIP
DSYIKAPSVKFEIYRKIASISTQQELQALGAELADRFGTMPEEVANLLYIAELKIVCRRL
SVFHLLEKNGAVTVEFSHVASLSINKVLDLVKLSGGDVKLDPKRPNMLSMKTSAVSLKDK
ALFILEKLQRLM
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttatgcaattgcaggtagtaacgtcgcttcaatcctatatcaaatcacttgaa
gcatacaagggattcgtctcatcccctgatgtcccggtgtatcttgacaacttgtcaggt
tatcctttggccgagtgcatccgtctttttgcacgcaaagtccccggcagggtctgggta
atctgctcgaccgaggaagctgcttctcaattattgaaagacgggtttgccacaagcggt
gatgacgggaagaccaatgaccagaagtttctctatcttccttccaacggcaagacactg
tacagttcgtgggaaggaacaaagcgtgagtatgtccagcttctggcactccaatccgcc
cagaaaactgaaaagggaatcatagtaacccatctgcgtgcatttgtttctcctgtggtc
gctttcaatgcccttcaggaagcttctttggaaatagcagtaggaaaaccgtttgaaacg
gaaaaaagcgcggagaaactagcgaacggagggtatttccggagtcctaccactggctct
cccggtgaattttccatcaggggagaagtcctcgatatctttcctcacggtgaggatgct
ccggtcaggatttacgcagactgggatgtcgttgataagatttcctattttgatccggtg
acacaacagacaaacggcagtatggccaggattagtgtcgtccttcctgacatgtcagac
aagagtgtgacaggccctatactgccctatttacgggaaaacgattatttctttttcatc
ggagaccagcggcttgaatcatcgttccatgccttggaagtcgaagcaaaggcattgtac
cggacggcgttccatgaagataggtccgtggcgaagcctgatatcctgcttgtcgatttc
ccacggttccgcgcggcgacatcacgaagtgccgtcataactgatatcgtaggcagacat
gccggggcaagccatgtggacattgcaggtccccgttcttttttcggcgacttcactatg
gtaaaatcagaactgacacaattgttcaagaacggttggaatgtcacgatttttacaacc
acggaacaacagaaagcacgtttggcccagatgttgaatgtttttccccagattgtatat
gtcggaactgaactttcagggggtttttccctgccgtccagaaaagaaatcgtcatgtgc
gaccatgaaatattcggtcgcaggaaacaagtcatccagagattgcataaaatccagagt
tccccgctcgattcctttgtcgatttgtccgagggagactatgtggtacatgcgaactat
ggtgtcggacagttcatcaagatagacagggtcggtgtatcaggacgggaacgcgactat
atcaagatacgttatgcaagcgatgagaacctgtacgtacccatagaacaggcaaacctc
atacagagatatatcggcagtgccggaggctctccggctcttgatcatcttggcggtcaa
ggatgggagcataagaaggctcgcgcacggaagtccgcggaacaactggcgacacgcttg
cagcagctctatgcacggagaaagaatgcccgtggcttcccgttccctcccgatacagac
tggcagctccagtttgaagcttcttttccttatgatgagacggaagaccagctgacctgc
attgaagatatcaagaaagacatggaaagtcccatagtcatggacaggctcgtctgcggg
gatgtcggctatggcaagacggaaatagctttcagggcggcgttcaaggcagtaatgagt
gggaaacaggtggtattccttgctccgacgaccattcttgctgaacaacattacaatact
ttcattggtcgtctaggggactttcccgtgcgcgtcggtcttttgtcccgcatggtacca
cggaaagaacagtccaaagtactgaaaaaccttcaagccggacagcttgatattttgttc
gggacgcatcgtgtcatccagaaagatgtcaagttttccgacttggggctgcttgtggtg
gatgaggaacagcggttcggggtcaaggacaaggaacgcatcaaagagatgcgtaccagc
gtggattctctttctctttccgctaccccgataccgcggacactgtatatgtccttgttg
aggatcagggacatgtctctgttgaccacgcctcccatagcccggcgtcctatccgtacc
attatacagcaatatgatccggacatcgcagaaaaggcaatcaggaatgaactgggcagg
ggaggtcaggtattctatctccataacaggatagaaacgcttgggatggtcgtcaataaa
ctgcgggaacgcatgccggagttcgccatagaaagtgctcatgggcagatgaacggagat
gacttggaagatacgatgcgtcgcttcatccatgagggcatccaagttctcgtctccact
acaatcatagagaatggcatagacatccccaacgtcaacacaatcatcattgacagggcg
gacatgtatggcgtaagtcagctttatcagctccggggacgggtaggtcggagcgatcgt
gaggcgtgcgcctatcttttctatccgcaggaagaaatgctcagtgaaatcgcgataaga
cgactacagaccatcagccagcatactgagttgggtggtggctttaaagtagcgatgaag
gatatggaaatccgtggaaccggcaatctcctgggtagggaacagagcggacaggtagcc
tctgtggggcttgatatgtttctcaagatactcgatgagaccatttcaaagatgcagaat
gcggacgatgattcttcaagggaagtctatcttgaacttgactactccggtttcataccc
gacagctatatcaaggctccttccgtgaaatttgagatataccgcaagattgcttcaatt
tccactcagcaggaattgcaggcactgggtgcggaactggcggatcggttcggaaccatg
ccggaggaagtagcaaatcttctctacatcgccgagcttaagattgtgtgtcgcagactg
tctgttttccatctgctggagaaaaacggcgcggttaccgttgagttttcccatgttgcg
tccctgtcaatcaataaggtgctcgacttggtgaaactatccggcggtgatgtgaaactt
gacccgaagcggccaaacatgctctctatgaaaaccagtgccgtttccttgaaggacaag
gcactgttcattctggagaagctccagcgtctgatgtga
DBGET
integrated database retrieval system
