Parasphaerochaeta coccoides: Spico_0744
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Entry
Spico_0744 CDS
T01469
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03420
Nucleotide excision repair
scc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spico_0744
03430 Mismatch repair
Spico_0744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scc03400
]
Spico_0744
Enzymes [BR:
scc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spico_0744
DNA repair and recombination proteins [BR:
scc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spico_0744
MMR (mismatch excision repair)
Other MMR factors
Spico_0744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
YgfZ_barrel
Motif
Other DBs
NCBI-ProteinID:
AEC01969
UniProt:
F4GLJ9
LinkDB
All DBs
Position
871557..873563
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AA seq
668 aa
AA seq
DB search
MSFDLRRELNPEQYLAASTIDGPLLIIAGAGSGKTRMLTFRVAHMLENGISPHSILALTF
TNKAAAEMAERIHDLTGVSRKELMATTFHAFGMKLLKKYIHLLGYKDNFTIFDASDVQTL
LSDVIHNLGYEEADYNFFELASLFSDVKTGRASFRSDGKSELSHVYTEYQKSLKAYNALD
FDDLIMLPLRLFAEHPETLAEIRKTYSHILVDEFQDTSLTQYSIVKELAWEHRNLCVVGD
DDQSIYSWRGANYRNIIMFESDFPERLEIKLERNYRSTGTILEAANNVIVHNTERKSKKL
WTQESVGSMIHRLEPKDEDDEAAMIIGKIRELRFAHDYPWKNFGVLVRTNHMLPVLENRF
LLTNTPCKISGGASFFDRKEVKDIISYLRLLVNTKDDVSFLRVINVPRRGIGRKTIEKIR
ATAESNQCSLHEACSLVSIATDSGMKGNQKKTLADFFALIEDYREKLFHAGKNKSKVLMA
LVENISYKDYVIDQYPTNEKAVNFKMGSIRTFNAMFGRWERDPDNNGSSVFDYLNRLALS
GKENTDDDDKVHLMTMHASKGLEFAVVFLAGIEDHIIPHARTLEENQDSLAEERRLFYVA
LTRARKHLYISTCMARHRGKELTASVPSRFLLEIPAHLVTTEDEEAKPASKEDLSRILDK
FKAKLDAK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttcgatttacgacgggaactgaatcccgaacaataccttgcggcgtcaactatt
gacggtcctctgctcatcattgccggcgcaggaagcggcaagacccgcatgctgaccttc
agggtcgcccatatgctggaaaatggcatatccccccactccatccttgccctgactttt
acgaacaaggcggcagctgagatggcagaacgcatccatgatctgaccggcgtcagcagg
aaagaactcatggcaacgacttttcacgcattcggcatgaagcttctcaaaaaatacatc
cacctgttaggatataaagataatttcaccatcttcgacgcatcggatgtacagacactc
ctttcggatgtcatccataaccttggctatgaagaagcggattataatttctttgagctt
gcatcacttttcagcgatgtcaagaccgggcgagcctcattccgctccgatggcaagtcg
gagctgtcccacgtctataccgagtatcagaaatcactgaaggcttacaatgcccttgat
ttcgatgatttaatcatgctccctctccggctgttcgcggaacatcctgaaaccttggct
gaaatacggaaaacttattcccatatccttgtcgatgaatttcaggatacgtccctgacc
caatactccattgtaaaggaattggcatgggagcataggaacctctgtgtggtcggcgat
gacgatcaatcaatctattcatggcgtggggcgaattatcgcaacatcatcatgtttgaa
tccgatttcccggaaaggcttgaaataaaactggaaaggaattaccgttcgaccggcact
atcctggaagcagccaataacgtcattgtccataacactgagagaaagtcaaagaaactc
tggacacaggaaagcgtaggcagcatgattcaccgccttgaaccgaaggatgaggatgat
gaagctgctatgatcatagggaaaatcagggaactccgttttgcccatgattatccatgg
aaaaactttggcgtacttgtgcgaacgaaccatatgcttcctgtcctagaaaaccgcttc
ctgctgacaaacacaccctgcaagatttccggaggagccagtttctttgacaggaaggaa
gtaaaggatatcatctcttatctacgcctactggtgaacacaaaagatgatgtgagcttc
ctgcgcgtcataaatgtcccgcgcaggggaataggacgcaaaacaatagaaaaaatccgc
gcgacggccgaatccaaccaatgttcgctccatgaagcctgttctttggtcagcattgcc
acggacagcggcatgaaagggaaccagaaaaaaaccttggcagacttctttgccttgatt
gaagattacagagagaagttgtttcatgccggaaaaaacaaaagcaaggttctcatggcg
ttagtagaaaacatcagctataaggattatgtcattgaccagtatccgactaatgaaaag
gcagtcaacttcaagatgggcagcatccgcaccttcaatgcgatgttcgggagatgggaa
cgcgatcctgacaataatggttcatcagtctttgactatctgaacagactggcgttgagt
ggcaaagaaaatactgacgatgatgacaaagtgcatctgatgacaatgcacgcctcgaag
ggtttggaattcgccgtcgtctttctggcgggaatcgaagaccatatcattcctcatgca
cgcacgctggaggaaaaccaggactctcttgcggaagaacgtcgtctgttttacgtggca
ctgacacgagcccgcaaacacctgtacatttccacctgcatggcacgacatagaggaaag
gaattgacagcatccgtgccgtcacgatttttgcttgagattccggcacatcttgttacg
acggaagatgaagaagcaaagcctgcttccaaagaagacttgtcaagaatacttgataaa
ttcaaagcaaaacttgatgcaaaatga
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