Parasphaerochaeta coccoides: Spico_0804
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Entry
Spico_0804 CDS
T01469
Name
(GenBank) Collagen triple helix repeat-containing protein
Organism
scc
Parasphaerochaeta coccoides
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
BppU-like_C
Motif
Other DBs
NCBI-ProteinID:
AEC02029
UniProt:
F4GHD0
LinkDB
All DBs
Position
complement(942983..947212)
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AA seq
1409 aa
AA seq
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MVEENIRILLGASHDYDISSSLVAGSFSLKRTLCDASFKSTLNSIRFSLIYSAEIVSYLM
TSTQRIPILVFLNEQSIFEGKMDPQLSTSWQGMDMGPLSLEAVDFTVDLNVSLKQSVNWP
EDVGGDSFWIFKRSDVEHSILYRLLKQAGLEGRIASDAPDISKRVRHFAASKGDATYRSL
IDALGQDFDFVLTTTSSGQFITWEWTVSGNLSQAGLLTDDDILANRGGTGLTISKRYEAY
DGVKVTWPKLKVMSDALLWRGNLPVGDTSDPTPGEAIAAGDYWPEDSDIIETWQKFGADY
LDTSYLSGQTRLQNKDLGLVSSSNHYIKDIKDESIQLDPIRPGITAVVYEALQAQLRYKN
YGSSAAKLYWAEIWGKALARDSLIETCYPELPETPYIHKAGYITDSGEAERLTNTLWIRF
SQGIYDISFRSSQSYEPGSRKKIKLENGWEGYVIIIGCSRAYDFNGINSYTAVSVQGGLE
VTPTTTAHQSSGKSVLPGKDGEPGEKGEQGLTGADGKSSYFHQAWANSSDGTVGFSTSVS
AGKLFIGTYSDFTSTDSTSPSSYNWQPVKGDKGDKGDKGERGERGLQGLQGEDGVQGIPG
VPGEDGLTAYGHIAYADTEQGGGFSQNPVGKAYVGFYSDHNPADSIDPSDYNWSLIKGAD
GAQGIQGPTGADGKTSYFHTAWANSSDGTVGFSTTASAGKLFIGTYSDFTAADSTSPSSY
NWQPVKGDKGDKGDQGEPGSSGIPGYLGVSTSGLTLSVRGFDSDGNFGADTGYIYAGSQR
ISVIGTDYICTGQGQGYILIDQGGVVAFARLQPQSVGSNAWMEWQNFNSGDIISGSFVVG
QFAVSGEILSAEMMTVVSTDRFISQQAMAIMQGSESSLDTNLNLWAKALGIEKLFERVGA
MEAFVNKLFANQVEVIGSIYSGYDAAGNPPSDGSGWWLGQGQLKAVRAILRDIIVETLDS
DGLTPVLKTQRAVKGETRESAPGKTLWSTDALYSAVALSVSQDLQTISGSYLGKTISGGT
KLAGTSAFLLKDQFSGSHSQWGEYPELKWSYTIPAGIYVFSYRLTSESLSSTRPATSLLT
KNNASYASFFARVSSGASIGPQTVTGTIQVNPGDTIKLFVNGSESSSGSETGGAGWVYFD
CLSQASHGVFVRFSDGNTSLISLDTFRQDSCVIGAWSSQNNLHYISGTDFYSGLSSLQIG
MDTATNTASSTVALTPAGGSAKTLTGIAKVTRNADGITFANATESVTIQNWGGTGSAVGV
YSAVSCSVQLLSQRAQVIMSNPTPATSTTSLGTSEEPFYGGYVSDALRAVGNIPMNLVRA
WGVWSNGLVADFNVNTFQYRGTGKWSVVFDNLLPTTNYALFVVGIRTDEPNDYAVIGQMS
TRYTEKCNFTINHNASLNGHTNFAVLAIG
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagaaaatatccggatattgctaggagcttctcatgactatgatatttcctct
tcattggtcgcagggtcattctcattgaaaaggacactgtgcgatgcatccttcaaatcg
acgctcaactccatacgcttcagcctcatctattctgctgagattgtctcctatctgatg
acatctacacagagaatccctatcttggtttttctcaatgaacaatcgatttttgaaggg
aaaatggatcctcagctgtcaacatcctggcaggggatggacatggggccattgagcctt
gaggccgttgattttacggtcgacctgaatgtttctctgaagcagtcagtaaactggccg
gaagatgttggaggagattctttctggatttttaaacgctctgatgtggaacacagcatc
ctctacagactgctgaaacaggcaggtctggaagggcgcattgcctctgatgctccggat
atcagcaagcgggtcagacactttgcggcgtcaaagggtgatgcgacatataggagcctc
atagatgccctgggacaggatttcgacttcgtacttacaaccacttcatccggccagttc
attacttgggaatggaccgtaagcgggaatctctcccaggctggactccttacagatgat
gacatacttgccaaccgtggagggacaggcctgacaatctcaaagaggtatgaagcctac
gacggagtgaaggttacatggcccaaacttaaagtcatgtcggatgccctgctgtggcgc
ggcaatctgccggtaggggacacatctgacccgacccctggggaggcgattgcggcaggt
gactattggccggaagattccgacatcattgagacttggcagaaattcggagccgactat
ttggatacctcatatctctccggacagacacggttgcagaataaagacctgggccttgtc
agcagcagtaatcactatatcaaggatatcaaagacgaaagcatacagcttgatcccatc
cggccaggcatcaccgctgtggtgtatgaagcccttcaggcacagctgcgctacaagaat
tatggctcatctgctgcgaaactctactgggcagaaatctggggaaaggcattggcccgg
gacagcttgattgagacgtgttatccagagctgccagaaactccttatatccataaggct
ggttacatcacggattctggtgaagctgaaagactgacaaatactttgtggatccgtttc
agccagggaatctatgatatatctttccgttcatcacagagctatgaaccaggttcaaga
aaaaagataaaacttgaaaacggttgggaaggttatgtcatcatcattggttgctctagg
gcatatgacttcaacgggatcaattcatatactgcggttagtgttcaggggggattggaa
gtcacacccaccactacagcgcatcagagtagtggaaagtcagtattacccggcaaagat
ggagaaccaggagaaaagggggaacagggactcacaggagctgacggcaagagctcgtac
ttccaccaagcatgggcgaacagttctgatggaacggttgggttctcaacgtctgtctcg
gcagggaagctattcatcggtacctattccgattttacgtccacagattctaccagtcct
tcatcgtacaactggcaaccagtcaagggcgacaagggcgacaagggagataaaggagaa
aggggagagaggggcttacaggggttgcagggagaagacggagtacagggcattcccggc
gttccaggggaagatggactgacggcctacggccacatagcctacgcagacactgaacag
ggtgggggcttctcgcagaaccctgtgggtaaggcatatgtgggattctatagcgaccac
aatccggcagactctatcgacccctctgactacaactggtctcttatcaagggagctgac
ggagcgcaggggatacaggggccgacaggagctgacggcaagacatcgtacttccacact
gcatgggcgaacagttctgacggaacggtcggcttctctacaactgcctcggcagggaag
ctattcatcggcacttattccgatttcacggccgcagattctaccagtccttcatcgtac
aactggcaaccagtcaagggcgataagggcgataaaggagaccaaggtgaacccggttca
tccggcattcctggctatctgggtgtatcgacttccggcctgacgctctcggtcaggggc
tttgactctgatggaaactttggagcggacacaggatatatctatgctggatcacagagg
atttcagtcatcggtaccgactacatctgcacaggccagggacagggctacattctcatc
gaccaaggcggggtggtggcctttgcccgacttcagccgcagtccgttggaagtaatgcc
tggatggagtggcagaatttcaattctggagatatcatttctggcagtttcgttgtcggg
cagtttgcagtctccggagagattctttccgccgagatgatgactgtggtcagtacagac
cgtttcatttcgcagcaggcgatggcgattatgcagggctctgagtcttcccttgataca
aacttgaacctctgggctaaagcgttaggcattgaaaaactgttcgagcgggtgggagcc
atggaggcgttcgtaaacaagctgttcgcaaaccaggtcgaggtcataggctcgatatac
tccggctatgacgccgcagggaatcctccttcggatggttccggctggtggttgggacag
gggcagctcaaagcggtccgggcaattctgagggacatcattgttgagacgttggattca
gatggcctgacgccggtgctcaagacgcagcgtgctgtcaagggagagacgagagagtcc
gctccggggaagacgttgtggtctacagatgcactgtactcagcagtggcactgtcggta
agccaggacttgcaaaccatctctggctcttatttgggaaaaactatttctggtggaacg
aaactcgccggaacaagcgcctttttactaaaggaccagtttagcggcagtcattctcag
tggggcgagtatcctgaactgaagtggtcgtataccatccctgctgggatatacgtgttt
tcttatcggttgacttctgagtcactctcatccacaagaccagcaacatctttgctgact
aagaacaatgcgtcttatgcctctttctttgcaagagtaagtagtggtgcgtctattggc
ccgcaaactgtgacaggaacaatccaggtcaacccaggggacacaatcaaactgtttgta
aacggaagtgaatcctcaagcggttctgaaacaggcggtgctggttgggtgtacttcgat
tgtctgtcacaagcgagtcatggagtgtttgtaagattctccgatggaaacacatctttg
atatctctcgacactttccgtcaggatagttgcgtaataggtgcatggagttctcaaaac
aacctgcattatatctccggtacggacttctacagtgggctgtcaagtctccagatcggt
atggatacggcaaccaatacggccagttcgaccgttgcactcactcccgccgggggaagc
gccaagaccctcacaggcatagcaaaggtcacacggaacgccgatggcataacctttgcc
aatgcgactgaatctgtgactatccagaattggggtggcaccggttcagcggtaggagta
tattctgccgtgtcttgtagtgtgcagttactctcccagagagcacaagtcatcatgagc
aatccaactcctgcaaccagtactacaagtctgggaacatcggaggagccgttctatggg
ggatatgtttccgatgcattgcgagcggtcggaaatattcccatgaatctggtgagagca
tggggtgtgtggtccaacggacttgttgcagattttaacgtaaatacattccaatataga
ggaactggtaaatggtctgttgtctttgataatctattgccaacaacaaactatgcttta
tttgttgttggcatccgaacggacgaaccgaacgattatgctgttatcggccagatgagt
actcgttatacagagaaatgtaactttactatcaaccataacgcatcgctgaatggacat
acaaactttgccgttctggctatcggatag
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