Parasphaerochaeta coccoides: Spico_1194
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Entry
Spico_1194 CDS
T01469
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03420
Nucleotide excision repair
scc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spico_1194
03430 Mismatch repair
Spico_1194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scc03400
]
Spico_1194
Enzymes [BR:
scc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spico_1194
DNA repair and recombination proteins [BR:
scc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spico_1194
MMR (mismatch excision repair)
Other MMR factors
Spico_1194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEC02407
UniProt:
F4GL67
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All DBs
Position
complement(1384019..1386445)
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AA seq
808 aa
AA seq
DB search
MSFLPENGGSGSPDELLAGLNEPQREAVLENSAPLLVLAGAGSGKTRVITTKIAWCIRAL
GIAPWKILAVTFTNKAAGEMRDRVLAMVPDANPQDFMIRTFHSFGAWFLRRHGELLGLNS
GFTIYDDEDSLSLLASAYPEFKKKELSPYMKKIAAAKDRGITAGASLGFVKDKRLPEMFD
AYQRRLHAIGNVDFADLIGRSIELLDAHPDIADKMRNRFRVILVDEYQDSNPAQFELLAR
LVGSDTILCVVGDDDQSIYRFRGAEIKNILSFPEKYPGTRIIKLEQNYRSTGNILAVAGA
VISHNTSRHEKTLWTDNPNGQKPLLTYVDDDKAEARLIGQMISQDKNYRETAILYRTNAQ
SMNFELVLPRMGIPVKVIGSLRFYEREEVKDGLALVSLALNHRDEVSFRRMANKPTRGLG
ASGMDKLLELATKHDGDLFQTMDDALESGLLSGKAAQGITAFRHMFDEALALLDSGDNVG
FASVLVEKSGLLAYYRQMDEKNETETKEGNLGALINMFAEYEKGREGIIACLENISLDPT
TLGVEGKDDGNYVKLITMHNTKGLEFDRVFVTGLEDGLFPGKMDDEDDMEEERRLFYVAV
TRARETLVLTSARRRMIWGRVSYQLQSPFIDEIPSGLLTVRGNRPGRGVYGWTSGSAGGS
GSFPGSFPGVFSGASARGGGYGERTYGENGYGNRGGSLDEKRARSRRYGDGTYVRRKDSG
TSGVFSDPSLAVAMAARVEKKKAEAEPVQDNEKRYDVGQRVLSHDYGMGEVVKAEDDRTG
RQVIDVVFETGRKARFISRFAVLDKIGE
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgagttttttgcctgaaaatggtggcagcggcagtcccgatgaactccttgcaggattg
aatgagccgcagcgcgaagcagtgctggaaaattcagctcctttgctcgtcttggctgga
gccggcagcggcaagacccgtgtcatcaccacgaagatagcctggtgcatccgtgcgttg
ggcatagctccatggaagattctggccgtcacgttcaccaacaaagcggcgggagagatg
agggacagggtgctcgccatggttcctgacgcaaatccccaagatttcatgattcgcacc
tttcactcttttggcgcgtggtttctccgccgtcacggggagctgttgggactaaattct
ggttttaccatctatgatgacgaagattccctgtcactccttgccagtgcctatccggag
ttcaagaaaaaagaattgagcccctatatgaagaagattgccgcggcaaaggatcggggc
atcaccgctggagcatccttgggctttgtcaaggacaaacgtctccctgaaatgttcgac
gcatatcagagacggctccacgccattggcaatgttgacttcgccgacttgatcggacgt
tcgattgagcttctggacgctcatcctgacatagccgacaaaatgagaaaccgtttccgt
gtcatcttggtcgatgaataccaggactcaaaccctgctcaatttgaactgcttgcccgg
ctggtcgggtcggacaccatcctgtgcgtcgttggcgacgatgaccagtccatctaccgt
tttcgtggcgcggagataaagaacatcctgtcgtttcctgagaagtatcctggaacccgc
atcatcaagctggaacagaattaccgttcaacggggaacatccttgccgtcgcgggcgcg
gtgatatcccataacacgtcccgccatgagaagaccttgtggacggacaaccccaacggg
cagaaacctctgctcacctatgtggatgatgacaaagccgaggcgcggctgatagggcag
atgatatcccaagacaagaattacagggaaacggccatcttgtaccgtaccaatgcccag
tcaatgaattttgagcttgtgttgccccggatgggtattccggtgaaagtcatcggctcc
ctgcgtttttatgagcgagaggaggtcaaggacggccttgccttggtgtctctcgctctg
aaccatcgggacgaggtaagtttccgccgcatggcaaacaaaccgaccagaggattaggc
gcgtccggcatggacaagctccttgaacttgccactaaacatgatggtgacctgttccag
acaatggacgatgccttggaatccggcttgctcagtggaaaggccgcccaaggaatcaca
gccttccgacacatgttcgatgaagcgcttgcgctcctggatagcggggacaatgtgggc
tttgcctcggtgctggtcgaaaaatcaggacttcttgcctactatcgccagatggatgag
aagaatgagactgaaaccaaagagggaaaccttggtgccctgattaacatgtttgctgag
tacgaaaaaggacgggagggtatcatcgcctgcctggaaaacatctcccttgatccgacc
acgctgggagttgagggcaaggatgatggaaactacgtcaagctcatcaccatgcacaat
accaaggggctggagttcgacagggttttcgtcactggacttgaggatggtttatttccc
ggcaagatggatgacgaggacgacatggaagaagaacgtcgtcttttctatgtagcggtg
acacgggcgcgggagaccttggttctgaccagtgcgcggcggaggatgatttggggaagg
gtgagctatcagctgcaaagccctttcattgatgaaataccttccgggttgctgactgtc
cgtggcaaccggccgggcagaggcgtctacggctggacttccggatccgccggtggttct
ggttcatttcccggttcgttccctggcgtattttccggcgcatcggcacggggaggcggg
tacggagagcgtacttacggagagaacggctacgggaaccgcggaggcagcctggatgaa
aaacgtgctcgttcgcgccgttatggggacggaacgtatgtacggcggaaggatagcgga
acttccggggttttctccgacccatcactggcggttgccatggccgcacgggtggaaaaa
aagaaagcagaagcagaacctgtacaggataatgaaaaacggtatgatgtcgggcagagg
gtattaagccatgattacggtatgggtgaagtcgtcaaggcagaggacgaccgtaccgga
cgccaggtgattgacgtcgtgttcgagactggacgcaaggcacgcttcatcagccgtttt
gccgtccttgacaagataggggaatga
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