Parasphaerochaeta coccoides: Spico_1315
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Entry
Spico_1315 CDS
T01469
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
scc
Parasphaerochaeta coccoides
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scc03016
]
Spico_1315
Enzymes [BR:
scc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Spico_1315
Transfer RNA biogenesis [BR:
scc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Spico_1315
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AEC02523
UniProt:
F4GM48
LinkDB
All DBs
Position
complement(1533075..1533971)
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AA seq
298 aa
AA seq
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MRDYTIIASDDAFLSLLDTWRQKGINLVAMDFEGEFNLHVYGEHLCLIQLYDGHDFYLID
PFIVSARTLKSFLEADDIEKIMFDCASDASLVRKQYGIQLRNICDLRVMAMALGFMGNLT
GLIEQYVPRNVPLIAESTDSSEKSGSKKKNQMTNWMKRPLTPSQLVYALEDVAHLFVLRS
ALVAEIAKAGLEEKVAALMRLAPLPKGPEKPGWEKLPGWRYLSRTARSFARAFFLVRDDI
ARKRNVPAARVLDKNLLVSLSRMAPLSRSAMEDALAVCPAADKLLPLMMEAQEKAAKK
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgattataccatcattgcctctgatgacgcctttttgtcattgctggacacctgg
agacagaagggcatcaaccttgtggcaatggattttgagggggagtttaacctccatgtc
tatggcgaacatctctgcctcatccagctttatgacgggcatgacttctatctgattgac
cctttcattgtttctgccagaaccttgaaatcctttctggaggcagatgacattgagaag
attatgttcgattgtgccagtgatgcttccttggtgagaaagcaatacggcattcaactt
aggaacatctgtgacctgcgagtcatggcgatggccttgggattcatgggcaaccttacg
ggactcattgaacagtatgttcctcggaatgttcccttgatcgcggaatctacggattca
tcggaaaaatcgggctcgaagaagaaaaaccagatgaccaactggatgaaacgtcccttg
actccttcccagcttgtctatgcccttgaggatgtcgcacatctgttcgtgctgcgctct
gctctggtcgctgaaattgccaaagcggggcttgaagaaaaggtagccgcgctgatgcgg
cttgctccacttccgaaaggccctgaaaagccaggatgggagaaacttcccggatggaga
tacctgtcccggacagcgcgttcctttgcccgcgcgtttttcttggttcgggatgatatt
gcccggaagcgtaatgttcctgctgcccgcgtccttgataagaatttgcttgtctcttta
tcccgaatggcgccattgtcacgttccgccatggaagacgccttggccgtctgtccagcg
gctgacaagctgcttcccctcatgatggaagcccaggaaaaggcagcaaagaaataa
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