Parasphaerochaeta coccoides: Spico_1330
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Entry
Spico_1330 CDS
T01469
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spico_1330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scc03019
]
Spico_1330
Enzymes [BR:
scc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spico_1330
Messenger RNA biogenesis [BR:
scc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spico_1330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
BipA_C
Motif
Other DBs
NCBI-ProteinID:
AEC02536
UniProt:
F4GM61
LinkDB
All DBs
Position
complement(1552006..1553895)
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AA seq
629 aa
AA seq
DB search
MKFTELPLHHTVLEGIGQAGFSDCMPVQERVLPVSLAGKDVMIQSKTGSGKTAVFLITIL
EKYVRAAEERAKAAKDSPEAEKSLPVALIVSPTRELAVQIEEDARILSATLPGYRVGCFY
GGVGYGGQDKLIAEGCDLYVGTPGRLLDYHKMRRLDFRMFDTFVVDEADRMFDMGFYPDI
QKMFSSMRPVSERQTMLFSATLSTRVRNLAWSYMSSPEEIEVQPEEITVNKIQQELYHIS
KDEKFRLFLQVLTKENPDNALIFTNTKAKSVEVCKRLLLNGYKAEYLMGDMPQKKRLSTI
DRMKDGKIKFLVATDVAARGLQIDDLQLVVNYDIPEDFENYVHRIGRTARAGKTGKSITF
ADEEYIYGLEAIENYIQMKIPVVWPEEGSLPDVEDKSAGKTFRQLVSREEYAGHSHETIP
GGNRTGRRGTRGPSSRSGSKSEGKREGKREGKRERPAQGAQDSPRKPAALPRVAEDGAKA
ATTPTGGGRAGSRQAMRSRGGKSYADIKNMSLEERMAYYKKQYGGESSEADASRKTGNVR
KDGRQQGDRPQGDRRREDSRTQKTSAASSSAPSSSASPQRTRRPNLTVPGGAGLDARRIV
TEATTRPKDEVPRKEGFFSRLRGLFGGKK
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttactgaattacccttgcaccatacggtgctggagggcatcgggcaagccggt
ttttccgattgcatgcccgtacaggaacgcgtgctgccggtttcccttgcaggcaaggat
gtcatgatccaatcaaagacgggaagcggaaagaccgctgtgttcctcatcaccatcctg
gagaaatacgtccgggcggcggaagaaagggccaaggccgcgaaagattctcctgaagct
gagaaatccttgccggtcgccctgattgtctctccgacccgtgaactggctgtccaaata
gaggaagatgcgcggatactgtccgcgacattgcccggttatcgtgtcggctgtttctac
ggaggcgtgggctacggtggtcaagataagctgattgccgagggatgcgatttgtacgtg
ggaacccccggtcggcttctggactatcacaagatgcgcagactcgacttccgcatgttc
gatacctttgtcgttgacgaggccgaccgtatgttcgacatgggtttctatcctgacatc
cagaagatgttcagcagcatgcgccctgtgagcgagcggcagaccatgcttttcagcgcg
acgttgagtacacgggtgcgcaatcttgcatggagctacatgagcagtccggaggaaata
gaagtccagccggaggaaatcaccgtcaacaagatacagcaggagttgtaccacatctca
aaagatgagaagttcaggctttttctccaggtgctcaccaaggaaaatcccgataatgcc
ctgatttttaccaataccaaggccaagagcgtagaagtctgcaagcgtctgctcctcaat
ggttacaaggctgagtatttgatgggggacatgccccagaagaaaaggctcagcaccatt
gacaggatgaaggatggcaagattaagttcttggttgctaccgatgtcgccgcccgcggt
ttgcagatagatgatttacaactggtagtaaactatgatattccagaagatttcgaaaac
tatgtccaccgtatcggtcgtaccgcgcgagccggaaagacaggcaaatcgattaccttt
gccgatgaagaatacatctacggacttgaggcgattgaaaactatatccagatgaagatt
cccgtagtctggccggaggaaggttcgcttcccgatgtagaggacaagagcgcgggcaag
actttccgacagcttgtcagtcgtgaggaatatgctggacattcccatgagactatcccc
ggtggaaacaggacaggacgccgtggcacaagaggtccgtcctcccgttccggctcaaaa
agcgaaggaaaacgggaaggaaagcgcgaaggaaaacgggagcgtcctgcacagggcgca
caggactccccccgcaagcccgcggctctaccccgtgtggcggaagacggagcgaaagct
gcgacaaccccaaccggcggcgggagagctggaagcaggcaggcaatgcgctcacgggga
ggcaagagctacgctgacatcaagaacatgtcgttggaagaacggatggcatattacaag
aagcaatatggcggtgaatcctccgaagccgacgcttcccgaaaaacaggaaatgtccgc
aaggatggcaggcagcagggcgacagaccacaaggcgacaggcgtcgtgaggattccaga
acacagaagacttccgctgcttcatcttctgctccatcttcctcggcttccccgcaacgg
acacgccgcccaaacctgacggttcccggaggagccgggctggatgccagacgcatagtt
acggaggctaccacccgtcccaaggatgaagtgccgcgaaaagaaggtttcttctcccgc
ttgcgggggctgttcggcgggaagaagtaa
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