Parasphaerochaeta coccoides: Spico_1452
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Entry
Spico_1452 CDS
T01469
Name
(GenBank) phage SPO1 DNA polymerase-related protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Spico_1452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scc03400
]
Spico_1452
Enzymes [BR:
scc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Spico_1452
DNA repair and recombination proteins [BR:
scc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Spico_1452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AEC02655
UniProt:
F4GI57
LinkDB
All DBs
Position
complement(1712398..1713267)
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AA seq
289 aa
AA seq
DB search
MMKPDAQTVSAALARLARNIDEAERAMTPPSPLPASLPLDIPDDAFLPFIRDAIDGENPS
VQQDSLEKGKEDGRQVQFLGASDVLFPDTEARDYSSCSLKELSTLVSSCKNCRLCETRTY
TVFGEGQEEHPVVMVIGEGPGRDEDLSGRPFVGKGGQYMDRWFAPIGVSRQTNAYIANIV
KCRPPGNRDPLPDEVQACIPYLRRQIALVQPRVILLAGAVAAHAILETKEGVGALRGRTF
SYMNIPVIVTYHPAGVLRNLDRLRAPVWEDMKRLASMVGLPVHAGKKQT
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagcctgacgcacagaccgtgagtgccgcccttgcccgtcttgcccggaatatt
gatgaagctgaacgtgccatgactccaccgtccccgctgcccgcatcccttcctctggat
attcctgatgatgcttttctgcctttcatacgggatgccattgacggggaaaacccgtcc
gttcagcaagattctctggaaaaaggaaaagaggacgggaggcaggtacagttccttggc
gcatccgacgttctttttcctgacactgaagcacgggattattcttcctgttccctgaaa
gagctttcaactcttgtctcatcatgcaagaactgccggttgtgtgagacgcggacgtat
acggttttcggagaaggacaggaggagcatcctgtcgttatggtaattggtgaaggtccg
ggacgagatgaagacctcagcggcagaccgttcgttggcaaaggcggacagtacatggac
agatggtttgcacctataggtgtatcccgtcagacaaacgcctacattgccaatatcgtg
aaatgccggccgccgggaaaccgtgatcccctgcctgatgaagtacaggcgtgcattccc
tatctccgtcggcagattgcacttgtccaaccgcgagtcatcctgctggcgggagcggtg
gctgcccatgccatcctggagacaaaggaaggcgtcggcgcgctgagaggacgcactttc
agttacatgaatattccggtgatagtgacctatcatcctgccggagtcctccgcaacttg
gacaggctccgcgctcccgtgtgggaagatatgaaacgacttgcctccatggtcgggctg
ccggtacatgccggaaagaagcaaacatga
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