Parasphaerochaeta coccoides: Spico_1586
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Entry
Spico_1586 CDS
T01469
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc02020
Two-component system
scc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Spico_1586
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Spico_1586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scc03021
]
Spico_1586
Transcription machinery [BR:
scc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Spico_1586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_Tnp_ISL3
Arg_repressor
HTH_21
LacI
Motif
Other DBs
NCBI-ProteinID:
AEC02788
UniProt:
F4GJP1
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All DBs
Position
1880198..1881703
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AA seq
501 aa
AA seq
DB search
MILRRVTFTSVMSSRTYDMLAPQLTLEQKQLLKLSPQMLQSFELMMLPLQELQARISDAI
ESNPALEIPESTSISYEDFTRMGFRDRDSMDDSLTDSASYGSDIYDGQHYRADGATPGEA
RGYDENAMQRQNRMIDGVLTQKESLQEHLFKQLNLHELTRRQRHIAELIISNLDANGFHT
LPVETLEDGLTQEDVAPVVSLLQSFDPSGIAVTDFRESLVVQARNDGLEAQVLDDFSRLV
YDALELMRPGKEAEAAKMLKLDPDEVSTLYAYLRSLTPFPGQAYNTEPDQFVIPDLSIHV
VDGSLEMRLNQDALPALTINTQFTGLGETLKERKDDPSSKETVEYIQKMSREASVLISQI
HLRNQTLHKVGLALIKLQSDFFFKGPRYLRPMTLKNVAEEVGVHETTISRISQAKWMDTD
WGFLPLKQMFSTGVATSGGSTADMSRTSVKEIIREIIDESENKRLSDQKISDLLAKKGIS
VARRTVAKYRKELDIDSSFGR
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgatcctacggcgcgtcacatttacttcggtgatgagttcgaggacgtatgacatgctt
gctccgcagctgaccctggaacagaaacaactactcaagctttcaccccagatgctccag
tcctttgagctgatgatgcttcccttgcaggaattgcaggcgcgtatttccgatgccata
gaatcaaaccccgcccttgagataccggaaagcacaagcatttcctatgaagacttcacc
cgcatgggcttccgcgacagagactccatggatgattccctcactgactccgcgagctat
ggctcggacatttatgacggccagcattaccgtgcggacggtgcgactcccggtgaagca
cggggatatgatgaaaacgcaatgcaacgccagaatcggatgattgatggcgtattgacc
cagaaagagagtcttcaagaacatcttttcaagcaattgaaccttcatgaacttacccga
cgccaaaggcatatcgccgaactcatcatcagcaacctcgatgccaacgggtttcacacg
ctaccggtcgagactcttgaagatgggttgacgcaggaggatgtcgccccggtcgtcagc
cttctccaaagtttcgacccttctggaatcgcagtcaccgacttccgtgaatccctggtc
gtccaggcacgcaatgacggactggaggcacaagtcctggatgatttctcacggcttgtc
tacgatgcgctggaactgatgcggccaggcaaggaagcggaagcggcaaagatgcttaaa
cttgatcctgatgaagtgtccaccttatacgcctacctcaggagccttaccccctttccc
ggacaggcgtacaacacggagcctgaccagttcgtcataccggatctcagcatccatgtc
gtagacggttcgctggagatgcggctcaaccaagacgcgcttcccgctctgaccatcaat
acccagttcactggtctcggtgaaaccttgaaggaacgaaaagacgatccctccagcaag
gaaaccgtcgaatacatccagaaaatgtcgcgcgaggcttctgtcctcatcagtcagata
catctgaggaaccagactcttcacaaggtcggtcttgccctgattaagctccagagtgat
ttcttcttcaaggggccgcgctatctccgtcccatgacgttgaagaatgtcgcggaggaa
gtgggtgtccatgaaaccacaatcagccgtatctcccaggcaaaatggatggataccgac
tggggattcctgcccctcaagcagatgttcagtactggagtcgcgacttccggaggctcg
acggcggacatgtcgcgcacatccgtcaaggaaatcatccgtgaaatcatagatgagtcg
gagaacaagcgtctttccgaccagaaaatcagtgacctgcttgccaaaaaaggaatatcc
gtcgcacgccgtaccgtagcgaaataccgcaaggaacttgatatcgattcttcttttggc
cgatga
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