Parasphaerochaeta coccoides: Spico_1722
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Entry
Spico_1722 CDS
T01469
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scc
Parasphaerochaeta coccoides
Pathway
scc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spico_1722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scc03021
]
Spico_1722
03400 DNA repair and recombination proteins [BR:
scc03400
]
Spico_1722
Enzymes [BR:
scc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spico_1722
Transcription machinery [BR:
scc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spico_1722
DNA repair and recombination proteins [BR:
scc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spico_1722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEC02920
UniProt:
F4GL88
LinkDB
All DBs
Position
complement(2028187..2031705)
Genome browser
AA seq
1172 aa
AA seq
DB search
MVAKGKAITRTYIGSDFEEVCDLPNLIGIQLDSYEKFLQFDRMRNGLKPDPALGLEDVFT
STFPIESANGEMRLVYDHYEVDMDGIKFSETECKRKGRTYSVPIKATISLEMPNGELREK
EIFFGDIPLMTERGTFIINGAERVVVSQIHRSPGVIFSNEKDIYSARIIPYRGSWLEFEI
DEKKHLIYTKIDRKKRILGTLFLRAIGFDTREKIIARFYAKQTVTLSNDADVKESLVGKY
LYSDVYVLKEGEEYKVLRAGDILHPHEIDQLMNDKVTSVDVIDLKAEGYLHSEIILNCFE
IEDAKYTNAEAGFDEPQKKDVLDPIYDVLMPGEMIPIERAEKELPDMFFSGRRYDLGNVG
RYKFNKKFGNGTDDNDEQMSTDLTVLTPDDIVNTMGFLIKVFIREENVDDIDHLGNRRVR
SVGELLQNAMKSAFARMERIARERMNLEGGSVRPQDLISIKPIVAAVKEFFGSSQLSQFM
DQVNPLAELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSL
ANYTRVNEHGFLETPYRKVVDGKATKQYRYLDANDEERYYIAQASAALDQDGAFVDADVP
VRRSGDYSTRHPQDIRYMDVSPKQVISVAASLIPFLEHDDANRALMGSNMQRQSVPLVFP
EAPRVGTGMEGRTAYDSGVLVKARHAGTVEYVSSTKIIVRLDKAEIEGDVEVYEVQKYQR
TNQDTCFTQRVIVSIGDHVDVGAVLADGPATQKGELALGRNILVGFVPWNGYNYEDAVLI
SERVVKDDIYTSIHIKEFTTDIRETKLGPEKLTRDIPNISEKMLEQLDEDGIVRIGASVK
PGSILVGKVTPKSESDTTPEFKLLNAIFGEKAKEVRDTSLKVPHGTEGTVIDIQRLKRSE
GDELPPGVEETVKVLIATKRKLRQGDKMAGRHGNKGVVSRILPMEDMPYMEDGTSLDVCL
NPLGVPSRMNIGQLLETQLGWAAVNLEEWYSTPVFQSGSMEQIEAKMREAGLPENSKTTL
YDGRTGVPFVNPVFCGYIYYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGE
MEVWALQAYGAANTLQELLTIKSDDMNGRVQIYKNIVNGEPATTAGMPEAFNVLVQEIRG
LALDMSVYDTKGKQVPLTERDEELINKSGSGN
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggttgccaaaggcaaagccataacgcgcacgtatatcgggtctgatttcgaagaagtc
tgcgatctgcccaatcttatcggcattcagctggattcttatgaaaagtttctccagttc
gaccgtatgaggaacgggcttaaacctgaccccgcccttggattggaagatgttttcaca
tctacctttcccattgaaagcgctaacggggagatgcgccttgtctatgaccactatgaa
gtggacatggacggaatcaaattctcggagacggaatgcaagcggaaaggccgtacctac
agtgtgccgataaaagcgaccataagtcttgaaatgcccaacggcgagctccgtgaaaaa
gagattttctttggggatatcccgttgatgacagaacgcggcactttcatcatcaacggc
gccgagcgtgttgtggtcagccagatacaccgttcacccggtgtcatcttttccaatgaa
aaagacatctattccgcacgcatcatcccataccgcggctcttggcttgaatttgagatt
gatgagaagaagcatctcatttatacgaagattgaccgcaagaaacgtattctcggtaca
ttgttcctccgtgcgatcggctttgatacccgtgagaagatcatagccaggttctatgca
aaacaaaccgtcaccctgagcaatgatgccgatgttaaggagagtctggtcggcaagtac
ctttattctgacgtatatgtcctcaaggaaggagaggaatataaggtcctgcgggctgga
gacatcctccatccccatgaaatcgaccaactcatgaacgacaaggtgacatccgtcgat
gtcatcgatctgaaggctgagggatatctccatagtgaaatcatcctcaactgcttcgag
attgaggacgcaaagtataccaatgctgaagctggtttcgacgagccgcagaaaaaagac
gtgcttgacccgatttatgatgtcctgatgcccggagaaatgattcccattgaacgtgct
gagaaggaactgcccgacatgttcttctccggccgcagatatgacctgggcaatgtggga
cgttataagttcaacaagaagttcggcaatggtactgatgataacgatgagcagatgtcc
acggatctgaccgtcctgaccccggatgatattgttaatacgatgggcttcttaatcaag
gtgttcatccgcgaagagaacgtggacgacatcgaccacctgggtaaccgccgggtacgt
tccgtcggagagcttttgcagaatgcgatgaagagcgcattcgcccgcatggagcgcatt
gcccgtgaaaggatgaaccttgaaggtggcagtgtccgtccccaggatttgatttccatt
aagccgattgtcgcggcggtcaaggaatttttcggcagcagccagttgagccagttcatg
gatcaggtcaacccgcttgccgagttgacccacaaacgccgtctcaacgccctgggtccg
ggaggactgtcccgtgaccgtgccggattcgaggttcgcgatgttcactacacccactat
ggccgcatgtgtcccatcgagactcctgaaggtccgaacattggcttgattgtgtccttg
gccaattataccagggtaaacgaacatggcttccttgagactccttaccgcaaggtggtg
gacggcaaagcaaccaaacagtaccgttatctcgatgcgaatgacgaagaacgttattac
attgcccaggcatccgctgccttggatcaggatggagccttcgtcgatgctgacgtgcct
gtgcgccgtagcggagactacagtacccgccatccccaagacatccgctacatggatgtc
tctcccaagcaggtcatttcggttgcggcgtccctgattcctttcttggaacacgacgac
gcgaaccgcgcattgatgggatcgaacatgcagcgccagtcagtgcctctagtattccct
gaagcaccgcgcgtcggtactggcatggaaggacgtacagcgtacgacagcggtgtgttg
gtcaaggcgcgccatgcgggaaccgtggaatatgtatcctccaccaagattatcgttcgt
ctggataaggcggagattgagggggatgtagaagtctacgaggtgcagaagtaccagcgt
accaaccaggacacctgtttcacccagcgggtcattgtatccattggagaccatgtggat
gtcggtgctgtgctggctgacgggccggcaacccagaaaggcgagcttgccttgggtcgc
aacatccttgtcggtttcgtcccatggaacggatacaactacgaggacgccgtcttaatc
agcgagagagtagtgaaggatgatatctatacatccatccatatcaaggaatttaccacc
gatatccgggaaaccaagctggggccggaaaaactgaccagggatattccgaacatcagc
gagaagatgctggaacagcttgatgaggacggcattgtccgtatcggcgccagcgtcaag
cccggcagcatcctggtaggaaaggtcactcccaagagcgagtctgacactacccctgag
ttcaagctgctcaacgcaattttcggtgagaaagccaaggaagtccgcgatacgtccttg
aaggttccgcacggcactgaaggtactgtcattgacatccagcgtctcaagcgttccgag
ggagatgagcttcctccaggcgtggaggaaaccgtgaaggttctgattgccaccaagcgc
aagctgcgccagggtgacaagatggccggacgccacggaaacaaaggtgtcgtcagccgt
atccttcctatggaggacatgccgtacatggaagatggtacttccctggatgtctgtctg
aatcctttgggagttccatcccgtatgaacatcggacagcttcttgagacacagcttgga
tgggcggcggtgaacctggaggaatggtattccactcccgtattccaatcggggtcgatg
gaacagattgaggccaagatgcgtgaggcagggcttcctgaaaactccaagaccacgctg
tatgatggccgcacgggtgttcctttcgtcaatcctgtattctgcgggtatatttattat
ctgaagttgcatcaccttgtcgatgacaagatgcatgcccgttccactggtccgtattct
ctggtgacacagcagcctctgggcggtaaggctcagttcggcggacaacgtctgggagaa
atggaagtgtgggctttgcaggcatatggcgcggcaaacaccttgcaagaactcctgacc
atcaagagtgacgacatgaacggtcgtgtccagatttacaagaatatcgtcaatggcgaa
ccagccacgacggcaggcatgccagaggcattcaacgttctggtccaggaaattcgtggg
ctggcccttgatatgtctgtctacgacacaaagggcaagcaggttccccttaccgaaagg
gatgaggaactgatcaacaagagtggctcaggaaactga
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