Gracilinema caldarium: Spica_0063
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Entry
Spica_0063 CDS
T01573
Name
(GenBank) UvrD/REP helicase
Organism
scd
Gracilinema caldarium
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEJ18235
UniProt:
F8EY76
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Position
complement(69489..73022)
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AA seq
1177 aa
AA seq
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MSAQQILDTEQEAAYEADYNVVVSAGAGSGKTTVLSHRYVRLIQNKKLPVDAILTLTFTR
KAAAEMFSRIHQELSKHKDPWVRQQLERFNTARIDTLDSFCASIVRGSCQNYGIPPNFTI
DEGRLKNLAEQTALEFLMEHQTEPVLQELVATFSFDIIVKDFFADFCQHQLPIVQVPSYK
DFARKQVDEFLSRINARLARLSAICSAGASLDTSTKHKTLLEIKAIFSNYQNCPRAYPEQ
EQEYDYLINLCKDITAIRKPSKVTPGTEMARAKELFSEGKDICVELTPLLVFYNKRGYIE
RIGELLDELAQRFNRNKRNEGLLSFGDLIDLAVDILKTSLPLRTYYKQQIRAIMIDEFQD
NNEKQKDLLYLLAEAEYEASHGIPSPEQLAPDKLFFVGDEKQSIYRFRGADVSVFKRLSE
ELSHQFNPQHHCQLSISTNYRSEPELIDFFNQLFPGIFGTPSEPYEAAYTQARATPKRER
SGTIPVELFINTTQLDEEISQEETSNEQTEPSQYCSPSETEAIAVAQRIIQGIEKKEFQF
SDVALLFRTTTHQSVYERVFRTVGIPFVSADPRGLFVDAPANDIYAFLQLVVSPQDTNAY
ATVLRSPFVNISDHTFLKLMLQLKDNLWYEPFSELSEDFWTAEYVSDRDRYNLGAELYDT
LLHMADIKGIAELVAWLWYESGYRTSLLQDSDMAATLGHFDLLYDMALKADQRHLTLAAF
LDELAPLIGNPEKVEGDETDTRADAVIFMTIHKSKGLQFPVVIVPQAGSEGQSFRNDKPY
FYSTTFGPVISWKPYSKHQKDKLANPLFEELRETENRQNLAELKRLFYVALTRAEQKVII
AGNKKINQDKIDETRSLYNGNLSDLQATLFATPKPDKKKQSFLELISLGIDQVSQTLYTL
QSIQPLTIAERGKELARLKERAKKRAGLSDEALQLQQALSSEKSFYNQPAISIPRYAPRI
TSPTIMEETYQKARSTNISEEGALPLPTLTVDHLIASSKNDLETLFGTLCHTIIQHTLEG
KGMEPPRELLAEFKTIELSKEHQKLFIEEAQNLAQQFLKTEYGKAAFNAKPKLRTEYSFL
LPLQNSDQRPILVKGSIDLIYETENHCVIIDFKTDKTLQPEIHRIQLECYHRAGKAFSDK
PVKTLLVYLRSMNTIEIKPILSDAKLYSIAQGATDAT
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccagcaaatcctcgatacagaacaagaggcagcctatgaggcagattataac
gtagtcgtttccgccggcgctggatccggtaaaaccaccgtcctttcccaccgctatgtg
cggctcatacaaaacaaaaagcttcccgtcgatgcaattttaacactgacctttacccgg
aaagccgccgcagaaatgttcagccgtattcaccaggaactcagcaagcataaagatccc
tgggtccgacaacagcttgaacgttttaatacagcccggatcgacaccctagattctttc
tgcgcctccatcgttcgcggttcctgccaaaactatggcattccaccgaattttactatc
gacgaagggcggcttaaaaatctggcagaacaaaccgctctggaatttctcatggaacat
caaaccgaaccggtcttacaagaactggtagctactttttcctttgacatcattgtaaag
gatttcttcgccgatttttgtcagcaccagctgcccatcgtgcaggtgccttcctataaa
gattttgccagaaagcaggttgatgaatttctctcccgtatcaacgctaggctggctcga
ctgtcagcaatttgtagtgctggcgcaagcctcgataccagcaccaaacataaaactctt
ctcgaaattaaggctatcttttcaaattatcagaactgtcctagggcatacccggaacag
gaacaagagtatgattatcttatcaacctgtgtaaggatattaccgccataaggaaaccg
tctaaggtaacaccgggaaccgaaatggcccgtgccaaggaactcttttcagaaggaaag
gatatctgtgttgaacttacgcccctgttagttttttataacaaacgtggttatatagaa
cgcattggcgaattactcgatgagcttgcccagcgttttaatcgaaataaacgcaatgaa
ggattactctccttcggcgacctcatcgatctagcggtggacatcttaaaaacatcacta
ccccttcgtacatactataaacaacagatccgggcaatcatgattgatgagttccaggac
aacaatgaaaaacaaaaggacctgctctacctccttgcagaagctgagtatgaagccagt
catggtataccttcaccggaacagctcgcaccggataaactgttctttgtgggtgatgaa
aaacaatccatttaccgattccgcggcgccgatgtttccgtatttaaacggctctctgaa
gaactgagccaccaatttaacccacaacaccattgtcagctttctatcagcactaactac
cgttcagaaccggaacttatcgattttttcaatcagctcttcccagggattttcggcacc
cccagtgaaccctatgaagcggcctatacacaagccagggcaacccctaaacgggaacgg
agcggtaccataccggtggaactgttcatcaacactacccaattggatgaagagatctct
caggaagaaaccagcaatgaacaaactgaaccatcacaatactgctctccttcagaaact
gaagcaatcgccgtagcacaacgaattatccagggtatagaaaagaaggaattccaattt
agtgatgtggcactccttttcagaaccaccacccatcagtctgtatatgaacgagtcttt
cgtaccgtcggcatcccctttgtcagcgctgacccccgtgggctgtttgtcgatgctcca
gccaatgatatctatgcctttcttcaattagtagtttctccgcaggataccaatgcctat
gctacggtgttacgttcacccttcgtaaacatcagcgaccatacatttctcaagctcatg
ctccagctaaaagataatctctggtatgaacccttttcagaactgtccgaagatttttgg
actgctgagtatgttagcgaccgtgaccgatataatctgggggcagagctctatgatacc
ctattacatatggccgatatcaagggtatcgctgaattggttgcctggctctggtatgaa
tcagggtaccggacaagccttcttcaggacagcgatatggcagctacccttggacacttc
gatctgctctacgatatggcactcaaagctgaccagcggcaccttacgctggctgctttt
ttagatgagcttgcaccgcttatcggaaacccagaaaaggtagaaggagacgaaacggat
acacgggcagatgcagttatatttatgactattcataaaagtaagggcctccaatttcct
gtggtcatcgttccccaggctggttccgaaggtcagtcattcagaaacgataaaccctac
ttttacagtacaacctttggccccgttatttcctggaaaccttacagcaaacatcagaag
gataaacttgctaatcccctcttcgaagaactgcgggaaacagaaaacagacaaaacctg
gcagaattaaaacggctcttctatgtagccctcaccagggcagagcaaaaggtaattatc
gcaggtaacaaaaaaataaatcaggataaaattgatgaaacccgttccctttacaacgga
aatctcagtgatctccaagccacactttttgcaacacccaaaccggataagaaaaaacag
agtttcctggaactcatctccctcggtatagaccaggtatctcagaccctttataccttg
caatccatacaacctcttaccatagctgagcgcggcaaagaactggcaagacttaaagaa
cgagctaaaaaacgtgccgggctcagtgatgaggctctacagctacaacaggcactaagc
tcagaaaaatccttttacaaccagccagccatctcaataccaaggtatgcgccccggata
acaagcccaacaataatggaagagacctatcagaaagctcgcagtacaaacatttcagaa
gaaggggctttacccttaccaacacttacggtagaccacctgatcgcttcttccaaaaac
gacctggaaaccctgttcggcaccctctgccatactatcattcagcacaccctagaaggt
aaaggtatggaacctccccgggaattactggcggagtttaaaactatcgagctttccaaa
gaacaccaaaagcttttcattgaggaagctcaaaatcttgcccagcaatttttaaaaacc
gagtatggtaaggcagccttcaacgcaaaaccaaagctccgaaccgaatacagctttctg
cttcccctccagaatagtgatcaacgccctattctggtaaaaggcagtatagacctcatc
tatgaaaccgaaaaccactgtgttattatcgattttaagaccgataaaaccttacagccc
gaaatccaccggattcagctcgaatgctaccatcgggcagggaaggctttttctgataaa
ccggttaaaactttgctggtatatctgcggagtatgaacaccatagaaataaagccgatt
ttgagcgatgccaaactatatagtattgcccagggagctaccgatgcaacctaa
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