Gracilinema caldarium: Spica_0410
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Entry
Spica_0410 CDS
T01573
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
scd
Gracilinema caldarium
Pathway
scd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spica_0410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scd03021
]
Spica_0410
03400 DNA repair and recombination proteins [BR:
scd03400
]
Spica_0410
Enzymes [BR:
scd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spica_0410
Transcription machinery [BR:
scd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spica_0410
DNA repair and recombination proteins [BR:
scd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spica_0410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_A_bac
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AEJ18574
UniProt:
F8EX47
LinkDB
All DBs
Position
451326..452381
Genome browser
AA seq
351 aa
AA seq
DB search
MARKNLLKGFKRPKGITFEHGELKPNYGKFIAAPFEPGFGTTVGNTLRRVLLSSIQGYAV
TAVKITSYDKDGVPHVVSSEFENIPNIVEDTLEVINNLKQMRLRLPEEVEQDTLLYEWKG
QCEIKSDDFSRPGQLEVLSQGQHIMTLMDDARIELEIQVDLGRGYVPSEVNEKYIEVIGT
IPMDAIFTPVKKVKYTVEPTRVGQRSDYDKLILEVWTDGTIRPDDALAEAAKIAKDHLSV
FINFDENNLGSEDDMDEGDERIRQILNTPVEELELSVRSSNCLKNANIRTIGELTRKTED
DIAKTRNFGKKSLQEIKEKLKEWNLSLGMTDYSVLKNSVKLTAEKEEEDEA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtaagaatctgcttaaaggatttaaacgtccgaaaggcatcacctttgagcac
ggtgaacttaagcctaattatggcaagtttatcgcggcccccttcgaacctggttttgga
acgactgtgggtaataccttgcggagggttctcctttcttcgattcaggggtatgcagtt
accgctgttaagattacatcctatgataaggatggtgtacctcatgttgtatctagcgaa
ttcgagaatattcctaatattgtcgaagacacccttgaggttattaataatcttaaacag
atgcggcttagactgcctgaagaagtagagcaggatacccttctctatgaatggaaaggt
cagtgcgaaattaagagtgatgattttagccgaccgggccagttagaggttctgagtcag
ggtcagcatattatgaccctgatggatgatgcccgaattgaactggaaatccaggttgac
cttggccgtggatatgtaccttccgaggtaaatgaaaagtatattgaagtcataggtacc
attcctatggatgcaatatttacgccggtcaaaaaggtcaaatatacggtagaaccaact
agggtcggccaacgaagtgattacgataaactgattctagaagtatggaccgatggtacc
attcgtcctgatgatgcacttgctgaagctgcaaaaatcgccaaggatcatttatcagta
tttatcaattttgatgagaacaacctgggttctgaagatgatatggatgaaggggatgag
cggattcgacagattctgaacaccccggtagaagagcttgaactctctgtccgttcatca
aattgtttgaaaaatgcgaatatccggactattggtgaattaaccagaaagaccgaagat
gatatcgcaaaaacacggaatttcgggaaaaagtcgttacaggagattaaagaaaaactg
aaagaatggaatctttctcttggaatgaccgattatagtgttctcaagaattcagttaaa
ttaaccgctgagaaggaagaagaagatgaagcataa
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