Gracilinema caldarium: Spica_0413
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Entry
Spica_0413 CDS
T01573
Name
(GenBank) Extracellular ligand-binding receptor
KO
K01999
branched-chain amino acid transport system substrate-binding protein
Organism
scd
Gracilinema caldarium
Pathway
scd02010
ABC transporters
scd02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Spica_0413
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Spica_0413
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scd02000
]
Spica_0413
Transporters [BR:
scd02000
]
ABC transporters, prokaryotic type
Phosphate and amino acid transporters
Branched-chain amino acid transporter
Spica_0413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_6
ANF_receptor
Peripla_BP_5
Peripla_BP_1
Fe-ADH
DUF7349
Phage_Coat_B
Motif
Other DBs
NCBI-ProteinID:
AEJ18577
UniProt:
F8EX50
LinkDB
All DBs
Position
453248..454366
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AA seq
372 aa
AA seq
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MKKLVNSILFFGIMVSFAFASGGQDAGTIKIGVAGAHSGDLASYGLPSVNAAKLVVESIN
AKGGINGRKIELVIEDDQCKPELATNAASKLVSNNVVAVIGHICSGATKSALGIYKDSKI
ITISPSATNPPLTQSGEYPNFFRTIAPDDAQAKLAANFLAKTLKLKTIAVLHDKGDYGKG
FAELVKQFAEAQGVTVALFEGVNPGAPDYSAVVNKIGNAKVDGVVWGGYHPEASKLVQQM
KDKGMNIPFISDDGVKDNTFIEVAGKYAEGVYATGPMDTTSNPLAIQAAEEHKKKFGEEP
GAFFLNAYAATLAITNAIAKAGSADYDKVSAALRSEYVDTPLGKISFDQKGDVIGFGFSV
FQVKNGKYVELK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaattagtaaattctatcttgttttttggtattatggtttcctttgcttttgct
tctggaggtcaggatgctggtactatcaagattggtgttgctggagcccactctggtgac
ctcgcttcttatggtttaccttctgttaatgcggcaaagctggtagtagaatctatcaat
gctaagggcggcattaatggtcgtaagatcgaacttgttatcgaagatgatcagtgtaag
ccggaacttgctaccaatgcagcttcgaagctggtaagcaataatgtggttgcggttatt
ggacacatctgttccggtgcaaccaaatctgcgttaggtatttacaaggattccaagatt
attactatttccccctctgctacgaatcctccgctcactcagagtggcgaatatccgaac
tttttcagaaccatagctccggatgatgctcaggctaaactggccgcaaactttttggca
aaaactctgaagctgaagactattgcggtgcttcatgataagggtgactatggaaagggg
tttgctgaactggttaagcagtttgccgaagcgcagggcgttactgtagctctcttcgaa
ggtgtgaaccctggtgcacctgactattctgctgttgttaataagattggaaatgcaaaa
gtagatggtgttgtatggggtggttatcatcctgaagcttcaaaacttgttcaacaaatg
aaagataagggtatgaatattcccttcatttccgatgatggtgtaaaggataataccttt
atcgaagtggctggaaaatatgcagaaggtgtgtatgcaactggtccaatggatacaacc
agcaatcccctggcaattcaagctgcagaagaacataaaaagaaattcggcgaagaaccc
ggtgctttcttcctcaatgcctatgcagctactcttgcaattaccaatgctatagcaaaa
gctggttctgctgattacgataaggttagtgcggcacttcgctctgaatatgtggatact
ccccttggaaagattagctttgatcagaagggtgatgtaattgggttcggcttctccgta
ttccaggttaagaatggcaaatatgtagaactgaagtag
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