KEGG   Gracilinema caldarium: Spica_0490
Entry
Spica_0490        CDS       T01573                                 
Name
(GenBank) signal recognition particle protein
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
scd  Gracilinema caldarium
Pathway
scd02024  Quorum sensing
scd03060  Protein export
scd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:scd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    Spica_0490
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Spica_0490
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Spica_0490
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:scd02044]
    Spica_0490
Enzymes [BR:scd01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     Spica_0490
Secretion system [BR:scd02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   Spica_0490
  Eukaryotic Sec-SRP protein
   Spica_0490
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N CbiA AAA_22 AAA_31 ArsA_ATPase MeaB Fer4_NifH APS_kinase nSTAND3 AAA_30 Zeta_toxin AAA_16 AAA_33 ParA Thymidylate_kin nSTAND_NTPase7 ATPase NPHP3_N ResIII KTI12 AAA_24 AAA_17 YqeC
Other DBs
NCBI-ProteinID: AEJ18654
UniProt: F8F001
LinkDB
Position
complement(536242..537603)
AA seq 453 aa
MLEKLTGKIQDALRTINGKATITEKNIEDAVEAIKMALLEADVNLRVVRRFVNSTIEEAK
GERVLRSVDPGQQFIKIVHDKLVAFLGDAKQDLNLKGPDTQSVILMLGLQGSGKTTSSAK
LALRLKKEGRKVLLVACDLIRPAAIEQLSVLGSQIGVPVYKEEGAKDPVKVYKGALETAR
KNLYDTIIVDTTGRLQIDQEMMTELVRLRDAAKPDELLLVADAMTGQSAVDIAKAFDEQI
GLTGVILTKFDSDTRGGAALSLKTITGKPLKFVGVGEKPEDFEPFYPDRVASRILGMGDI
VSLVEKAQQVVNQEEAAALQKKMLSEDFTLQDWLDQLRAVKKMGSLQSMLEMLPGMAGQI
SEEDLNKADMKTQEAIICSMTKKERENYLIIGPSRRARIARGSGTSVAEVARLLKKFEKM
RTMMKKMAKLGKNPKAAQAMMSRMGGMGGRGGL
NT seq 1362 nt   +upstreamnt  +downstreamnt
atgcttgagaaactgaccggaaaaattcaggatgccctgcgcaccatcaacggcaaggct
accatcaccgaaaaaaacatagaagacgccgtagaagccattaaaatggccctcctcgag
gccgatgtaaacctccgggtggttcggcgctttgtcaactccaccatagaagaagccaag
ggtgaacgggtactccgttccgtagacccgggccagcagttcatcaagattgtccatgat
aaactggtcgcctttttaggggatgcgaaacaggacctgaacctgaagggccccgacacc
cagtcggtgatcctgatgcttggtttgcagggttccggtaaaaccacgagttctgccaag
ctggctttgaggcttaaaaaggaaggccgaaaggtccttctcgttgcctgcgacctcatc
cgccccgccgctatagaacagctttctgtattaggatcccagattggggttcccgtatat
aaagaagagggcgctaaggatccggttaaggtctataagggggccctggaaacggcccgg
aaaaacctctacgacaccatcatcgtcgataccacaggccggctccagattgaccaggaa
atgatgaccgaactcgtccggcttcgggatgcggcgaaacccgatgaattactcctcgta
gccgatgccatgaccggccagtctgcggtggatatagccaaggcttttgatgaacagatc
ggccttaccggggtaatccttaccaagttcgactccgatacccgtggcggcgccgccctt
tccctgaaaaccatcaccggcaaacccttaaaatttgtcggtgttggcgaaaagcccgaa
gacttcgaacccttttacccggaccgggttgcaagccgcatcctcggcatgggggatatt
gtaagcctcgtagaaaaggcccagcaggtggtgaaccaggaagaggccgccgcccttcag
aaaaagatgctctccgaggactttaccctccaggactggctcgaccagctccgggcggta
aaaaaaatgggctccctccagtccatgctggaaatgctccccggcatggcaggtcaaatt
tcggaagaggaccttaacaaggcggacatgaaaacccaagaagcgatcatctgttccatg
accaaaaaggaacgggaaaactacctgatcattgggccgtcccgccgcgcccgcattgct
cggggatcgggaacatcagtcgctgaggtcgcccggctccttaaaaaattcgaaaagatg
cggaccatgatgaaaaaaatggccaaattggggaagaatccaaaggcagcccaggcgatg
atgagcagaatgggcgggatgggcgggcgcggcggcctgtaa

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