Gracilinema caldarium: Spica_0572
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Entry
Spica_0572 CDS
T01573
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
scd
Gracilinema caldarium
Pathway
scd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spica_0572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scd03019
]
Spica_0572
Enzymes [BR:
scd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spica_0572
Messenger RNA biogenesis [BR:
scd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spica_0572
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEJ18732
UniProt:
F8F188
LinkDB
All DBs
Position
complement(620680..622380)
Genome browser
AA seq
566 aa
AA seq
DB search
MEFTELTLHPDLQRGIADAGYVTCTPVQEQVLNNAFGGHDLYVQSQTGTGKTAAYLIVIF
QRLLTEPLLAGKKALIMVPTRELAVQVEDEAKRIGKYLSFKIGSFYGGVGYAHQQKLLRE
SVQILIGTPGRVLDLNGSGQMNLMDLAFLVLDEADRMFDMGFYPDLRKLIKVVPPVDRRQ
TMLFSATLNAWVKNLAWEYTKDPLEIEITPEQVTVDEIEQLLYHVPGDEKMKLLLGILKQ
RQPESAIIFCNTKKYAEIVAKRLRINDIPCEFIIGDLPQVKRLKIIDDVKAGKTRYLVAT
DVAARGLDIEGLAMVINYDLPNEAENYVHRIGRTARAGKTGIAISLASEQDVYELPAIEK
YLGAKIPSQIASEELYGEDKSEGMHIRTDTYDDSGYERSGSGRGRGPAKGRAKEERRDHG
RPMRQKPVRTGEGEGQALSEGRGKAKKQPSRSSVAKEKNGQHPVRQPQRHDQGQVAGTPA
PREKTAAKPNLAHLTFEERLAYYKRKYRAESSEAQEGTRAPKASAGKNRKALQSKTTPKV
SAQQKEGSSKKRGILSRLLSLFKGRK
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggaattcacagaacttaccttacaccccgacctccaacggggtattgcagatgcaggc
tacgtaacctgcacccctgttcaggaacaggtgctaaataacgcttttggaggccacgac
ctgtatgttcagtcccagaccgggacagggaaaacagccgcctatcttattgtcattttc
cagcggctattaacagaaccacttctggcaggcaagaaagcccttattatggttccaacc
agggaactggcggttcaggtagaagacgaggcaaaacgcatcgggaaatatctctccttt
aaaatcggcagtttttacggcggcgtgggctatgctcatcaacagaaactgctccgggaa
tcggtgcaaattctcataggaacccctggccgtgttttggatctgaatggctcaggtcag
atgaacctgatggatctcgccttcctcgtattggatgaagcagaccggatgtttgatatg
ggcttttacccggatctgcggaagctcattaaagtggttcccccagtagaccggcggcaa
accatgctgttcagtgccaccctgaacgcctgggtaaaaaaccttgcctgggaatacacc
aaggatcctctggaaattgaaattaccccggaacaggtgacggttgatgaaattgaacag
cttttatatcacgttcccggggatgagaagatgaaactgctcctcggcatcctgaaacag
cggcaacctgaaagtgctattattttctgtaataccaagaaatatgcagaaattgtagca
aagcggctcaggattaacgatattccctgtgagttcatcatcggcgacctgccccaggtg
aaacggcttaagattattgatgatgtaaaggccggcaagacccgctacctggtagccacc
gatgtggccgcccggggccttgatatcgaagggcttgcgatggttatcaattatgacctg
ccaaatgaagcggaaaactatgtccatcgtatcggcagaacagcccgggccgggaaaacc
ggcattgctatcagcctggccagtgaacaggatgtatacgaactgccggccatagaaaaa
tatctgggagccaagattccctcacagatcgcttcggaagagctctatggtgaagacaaa
agtgagggcatgcatatccgaaccgacacctatgatgacagcggatatgaacgatccgga
tctggtcgcggcagagggccggctaagggcagagccaaggaagaacggcgtgaccatgga
cgacccatgcggcaaaaaccggtacgcaccggtgaaggtgaagggcaagctctatcagag
ggcagaggcaaggccaagaaacagccctcccgttcatccgtcgcaaaggagaaaaacgga
caacacccagtccgacagcctcagcgtcacgatcagggacaagttgcagggactcctgcc
ccccgtgagaaaaccgcagccaaaccaaatctggcacatctgacgtttgaagaacggctt
gcttattataaacgtaaataccgggcagaatcatctgaagctcaggaaggaacaagggca
cctaaagccagtgcagggaaaaaccgcaaagccctgcagagtaaaacaacgcccaaggtt
tcagctcaacaaaaagaaggctctagtaagaagaggggcattttaagcagactgctcagc
ctgttcaaagggcgtaagtaa
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