Gracilinema caldarium: Spica_1285
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Entry
Spica_1285 CDS
T01573
Name
(GenBank) Ribonuclease Z
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
scd
Gracilinema caldarium
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scd03016
]
Spica_1285
Enzymes [BR:
scd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
Spica_1285
Transfer RNA biogenesis [BR:
scd03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
Spica_1285
Prokaryotic type
Spica_1285
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_4
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
AEJ19431
UniProt:
F8F2N7
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All DBs
Position
1454376..1455305
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AA seq
309 aa
AA seq
DB search
MNLEAFILGTGGMMPLPNRFLTSVLLRREGELFLFDGGEGTQVSLRKLNLRWKKISAIFI
SHTHADHVTGLPGILMLSSQVDRDDPLTIIGPPKIAEYIESSRRVLDMYINYDIVVKEIT
EPGIVYEGEHFHIRAFPLRHTKPCVGYVFEEDPRPGAFHPEKAEALKVPRGPLWSKLQNG
EPVVSSDGAMVYPEQVMGEKRKGRKFSYVTDTLAFPEIASEVANSDLFVCEGMFERDLLE
SAKEKKHMTAEQAAQIAVQAGGIKKLALIHYSPRYTEHNLKQLLKEAQAIFPDTVLSRDR
AVFPIEYED
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagaagcctttattcttggtaccggcggtatgatgcctctgccgaaccgattt
cttacctcggtcctcttgcggcgtgaaggagagctttttctgttcgatggaggagaaggc
actcaagtatccttacgaaaattgaatctacggtggaaaaaaatttccgcaatattcatc
agccatacccatgcagatcatgttaccggtttacctggcattcttatgctttcttcgcag
gtggaccgggatgatcctcttactattatcggtcccccaaaaattgcagaatacattgag
tcgagtcgacgggtgctcgatatgtatatcaactatgatattgtggttaaggaaataacc
gaacctggtattgtgtatgagggagagcattttcatatccgggctttccccttacggcat
actaagccctgtgtggggtatgtatttgaagaagatccacggcccggggctttccatccg
gaaaaagctgaggcccttaaggttccccggggcccactttggtctaagctccagaatgga
gaaccagtggtatccagcgatggggccatggtttatccagaacaggttatgggtgaaaag
cggaagggacgaaaattttcctatgttaccgatacccttgcattcccagaaattgcatcg
gaagtagctaattcagatctatttgtttgtgaaggcatgttcgaacgggacctccttgaa
agtgcgaaggaaaaaaaacacatgaccgctgaacaggccgcacaaatcgctgtccaggct
ggggggataaaaaaacttgccctcattcattatagtcctcgctatacagaacataattta
aaacagcttttaaaggaagctcaggccatattccccgatacggtactttcccgggaccgg
gcggtgtttcccattgaatatgaagattaa
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