Gracilinema caldarium: Spica_1342
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Entry
Spica_1342 CDS
T01573
Name
(GenBank) Holliday junction ATP-dependent DNA helicase ruvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
scd
Gracilinema caldarium
Pathway
scd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Spica_1342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scd03400
]
Spica_1342
Enzymes [BR:
scd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spica_1342
DNA repair and recombination proteins [BR:
scd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Spica_1342
RecFOR pathway proteins
Spica_1342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_22
nSTAND3
AAA_14
AAA_16
Sigma54_activ_2
TIP49
Mg_chelatase
AAA_3
TsaE
Sigma54_activat
NB-ARC
Rad17
AAA_33
RNA_helicase
NTPase_1
AAA_17
AAA_18
MUCL1
NPHP3_N
AAA_PrkA
NACHT
bpMoxR
ABC_tran
Bac_DnaA
IstB_IS21
AAA_28
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AEJ19488
UniProt:
F8F2U4
LinkDB
All DBs
Position
1516186..1517343
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AA seq
385 aa
AA seq
DB search
MANKKGLTPASSRSPATGSPAPSGATRPTTTGAGTTSGSPAPSGATTASIVHPETPLEED
RGDLSLRPRYLQEFLGQAAMKENLSVFISAAKQRKESLDHLFLIGPPGLGKTTLAQVVAN
ELGVDFKVTSAPALDKPKDLAGILTTVTEGTVFFIDEIHRLKPTIEEMLYIAMEDYELDW
IIGQGPSARTIRIPIPPFTLVGATTKAGMVSSPLISRFGITCRFSFYEQADMEAIVHRSA
GILKVSIDDDAAALIASSSRGTPRVANRLLRRMRDFAQVLEQGHISRRVVQEGLKRLEID
SLGLERYDREILKIIIERYNGGPVGAETLAISVGEAVDTLEDYYEPYLIQAGLLQRTPRG
RMVTPFAYEHLNLERNSNGNNGLLF
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagaagggactgacccctgcatcatcaagatcccctgccactggatcaccc
gcgccctcaggggcaaccaggccgacgacaacgggcgctggtactacaagcggatcacct
gcgccttcaggggcaaccactgcatccatcgtgcatcctgaaacacccctggaagaggat
agaggggacctttccctgcggccccggtatctgcaggagtttctcggccaggcggccatg
aaggaaaacctgtcggtttttatttccgcggcaaaacagcggaaggaaagcctggaccac
ctctttctcatcgggccaccgggtctgggcaaaaccaccctagcccaggtggtggctaat
gagcttggggtagactttaaggtgaccagtgcccccgccctggataaaccgaaggacctg
gcggggatcctgaccaccgttacggaaggaacggtcttttttattgatgaaattcaccgg
ctcaagcccacgatcgaggagatgctctatatcgccatggaggattatgagctcgactgg
ataatcggccagggccccagtgcccggacgatccggattcccattccgccctttaccctg
gtgggggccaccaccaaggccggcatggtttcgagccccctcatcagccgcttcggcatt
acctgccgtttttccttttacgagcaggccgatatggaagccattgtgcaccgctctgcg
gggatcctcaaagtatctatcgacgatgatgcggcagccctcatcgcttcctcaagccgg
ggtaccccccgggtggcaaaccggctcctcaggcggatgcgggactttgcccaggtcctg
gaacagggacatatcagccgccgggtggtgcaggagggcctgaaacggctcgaaattgat
tccctgggcctggaacgctatgaccgggagattttaaagatcattatagaacggtataac
ggcggccccgtgggggccgaaaccctggctatttcggtgggcgaagcggtggataccctg
gaagactactatgagccctacctcattcaggcagggctcctccagcggactccccggggc
cggatggtcaccccctttgcctacgaacaccttaaccttgaacggaacagcaatggaaac
aacggacttctcttttga
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