Gracilinema caldarium: Spica_1380
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Entry
Spica_1380 CDS
T01573
Name
(GenBank) transcriptional regulator, NifA subfamily, Fis Family
KO
K02584
Nif-specific regulatory protein
Organism
scd
Gracilinema caldarium
Pathway
scd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Spica_1380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scd03000
]
Spica_1380
Transcription factors [BR:
scd03000
]
Prokaryotic type
Helix-turn-helix
Other families
Spica_1380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
GAF_3
AAA_5
HTH_8
AAA
HTH_3
AAA_16
MCM
AAA_2
HTH_19
HTH_37
DUF3369
PF0610-like_N
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AEJ19526
UniProt:
F8F3F0
LinkDB
All DBs
Position
1564399..1565910
Genome browser
AA seq
503 aa
AA seq
DB search
MLASIDVQKFNTLIEINTLINSNYSDVRSLLTQILESATRLCEGEASSILLVNKQDNKLY
FEIALGAKGAAVKKYSLNMGEGIAGWVAQHNTSIIVNDVENDSRHLAEISKNIGYPSRTM
LAVPMRMKDECIGVIELINKKNGKYFTQDDLEWLEIFANQAALAIQNARSFEKAQEEIHF
LQDQIQTDKGYHTLIASSPVILEKLEIIDRVAKTDSSVLILGESGVGKELFAEQIHLKSS
RNQGPFVRVNCAALPEGLLESELFGHVKGAFTDAVQNRRGRFEMADGGTIFLDEIGDLPL
KLQAKLLRVIQQKSFEKVGSDTTIKVDVRILAATNRDIEALVEKGEFRSDLYYRLNVLPI
YIPPLRQRPEDIPELANFFLKKFSRETKKQFDGFSDEAMEIMLSYSWPGNVRELENCIER
ACVISKDRWIKAEDLLLRNMQHSPAMSEQRNLKNALTVFKKHYIKKVLEENNWNQTETAK
ALDIQRTYLSRLLKELDIVNPKE
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgctggcatcgatcgacgtccaaaagttcaatactctgatagagattaatactcttatc
aattcgaactattcggatgttcgatccttgctaacgcagatcctcgaatcggctacccgt
ctttgcgaaggggaggcttctagcatcctcttggtaaacaaacaagataataagctttat
tttgaaatcgccctaggagctaaaggcgcagcggtaaaaaaatattcccttaatatgggg
gagggtattgccggatgggtggctcaacataacacatcaattattgtcaacgatgtggaa
aatgacagccgacacttggctgaaatatcaaaaaatataggatatccatcccggactatg
cttgcagttccgatgcgtatgaaagatgaatgtatcggagttattgagctcatcaataaa
aaaaatggaaaatattttacccaggatgatttggaatggcttgaaatatttgcaaaccag
gcagctttagcaatacaaaatgcccggagctttgaaaaggcacaggaagagattcatttt
ttgcaggatcagattcagaccgataaggggtatcataccctcattgcttcgagcccagtc
attcttgaaaaactggaaattatcgatcgggttgccaagactgattcttcggtcctgatt
ttaggtgaaagcggggtaggtaaggagctttttgctgaacaaatccatctcaaaagcagt
agaaatcaggggccctttgttcgggtcaattgtgcggccctcccggagggactcctcgaa
agcgaactcttcggtcacgtaaaaggagcttttaccgacgctgttcaaaatcgccgtgga
cgatttgaaatggccgatggcgggaccattttccttgatgaaatcggggacttaccccta
aaacttcaggcaaaactactcagggtgatccagcaaaaatcctttgaaaaagttggttct
gataccactattaaggttgatgttcgtatccttgccgcaaccaatcgggatattgaggct
cttgtagaaaagggtgaatttagaagcgatttgtattatagactgaatgtattgcccatt
tatatcccaccacttcgacagcggccagaggatattccggaacttgccaatttctttctg
aaaaaattcagtagagaaacgaagaaacagtttgatggtttttctgacgaagctatggaa
attatgctttcctacagttggcctggtaatgtacgagaactggaaaattgcatagagcga
gcctgtgtcatcagtaaggatcgatggataaaagctgaagatcttttattgcggaatatg
cagcatagtcctgccatgtctgagcaacgaaatttaaagaatgctctcactgtttttaaa
aaacattatattaaaaaggttctcgaagaaaataactggaatcaaactgagactgcgaag
gctctggatattcagcggacctatttatcccgtctgcttaaagaacttgatattgtaaac
cccaaggagtag
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