KEGG   Gracilinema caldarium: Spica_1929
Entry
Spica_1929        CDS       T01573                                 
Name
(GenBank) metal dependent phosphohydrolase
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
scd  Gracilinema caldarium
Brite
KEGG Orthology (KO) [BR:scd00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:scd02048]
    Spica_1929
Enzymes [BR:scd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Spica_1929
Prokaryotic defense system [BR:scd02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    Spica_1929
SSDB
Motif
Pfam: WCX DEAD Cas3-like_C_2 ResIII HD HTH_11 Cas3_HD WYL PhoH Helicase_C HTH_IclR DUF1654 HDOD HTH_38 HTH_23 MarR_2 HTH_3 Sigma70_r4_2 HTH_29 HTH_Crp_2 MarR HTH_24 MIOX HTH_69 HTH_31 Sigma70_r4 HTH_20 HTH_28
Other DBs
NCBI-ProteinID: AEJ20059
UniProt: F8F440
LinkDB
Position
complement(2139461..2142703)
AA seq 1080 aa
MNRAENKATRLLQIENLLLAHPEGLTQAEIARKLQVDRSTINRDLMDLPASIYIDDIDGG
KLKIDRSASLINLNLTLHEAMALHLASRLLATRMDRKNPHTASALRKLSLSMRRWADQIG
HHVSIAADMMDDDSQKDDPNYVRVMELLTEGWANHRKVKIWHRSEKMGKTFMYLVSPYFI
EPYAIGQTTQLICLSEPPGTLRTYKVERIERAEKTNEPYTIPKDFDPRSLLAEAWGIWYT
DEEPQRILLRFTPRVAYRVKESLWHPTQIITEQDNGSLLWEAEIAEPQEMLPWIRGWGAD
CEVLEPKYLRETLEREVRKLAKLYGIGNISGPKSSFFAHRREGEDREDWQPLIEHLKKTA
EMARDFCADANIAELAYIAGLIHDLGKYSDAFQKRLEGTGPRVEHSTAGAKELKALLKGT
PQEVFAHLLVYPIMGHHTGLPDYGNETDLEGGTVCARLKNQLPDYSAYKSEVDLYTLSFP
KRLNIQPLRLRVFPDKPTKDYFGFSLSFLVRMIYSALVDADFQETETYMKGSKPRGGYDD
ITTLRDKMGAYLKQFENPSSDINHKRNEILQACIAKGMNEKPGFFSLTVPTGGGKTLASM
AFALHHAAEHGLKRVIYVIPFTTIIEQNAKVFKTIFGEGQVLEHHSNFDWEGKKRDNPDD
RTNSALAKLKLAAENWDIPIVVTTNVQFFESLFANRSSRCRKLHNIAKSVIIFDEAQMLP
REYMRPAMAAVWELVTNYGASAVFCTATQPGLERFLPENAEVRELAPNPHELFNFYKRVE
VKYVGTLPDEDLITRLNAHEQALCIVNTRRHASGLFSGLEGEGNFHLSTLMCPAHRRTKL
EEIKERLSSGKPCRVVSTTVMEAGIDLDFPVGYRALSGLDSINQAAGRVNREMRRGVSEM
FVFEPKSEFIKKTPSFLKQSAEVTRMVLRDHAAEPISIPVISAFFERLYDLQDPNISFDV
KRIMECFDSADARFKYETAAREFQIIEDSTETVIIPYNEEAQSLIEELKSTDYPFFTLRK
LQPYTVSIFTTEFDKLSSKGVILTIDDTYYVLNPDYMKEYYDFDKGLIIPENGGGDGLLF
NT seq 3243 nt   +upstreamnt  +downstreamnt
atgaatagagcagaaaataaggccacaaggctcttacaaattgaaaatcttcttttagct
catccagaaggacttacccaagcagaaattgcaaggaaactccaggtggatcgttcaacg
attaatagggatctcatggatctaccagcttctatttatattgatgatattgatggtggt
aaactaaaaatagatagaagtgcaagtcttatcaatctcaatttaaccctgcatgaagca
atggctttgcatcttgcaagcaggcttctggccacccgtatggatcgtaagaatccccat
accgcatcggcgttaagaaaattaagtctatcgatgcggcgatgggctgatcaaataggt
catcatgtgagtattgctgctgacatgatggatgacgattctcagaaagatgatcccaac
tatgttcgcgtcatggaactcttaacagaaggttgggcaaatcatcgaaaagttaaaatc
tggcaccgcagtgaaaagatgggtaaaacctttatgtatcttgttagcccttacttcatt
gaaccctatgcaattggacaaacaacccagctcatctgtttaagcgaaccgccaggaaca
ctacggacctataaggttgaacgaattgaacgggcagaaaaaacaaatgaaccctatact
attccaaaggattttgatcctcgctccctcttagctgaagcctggggaatctggtacacc
gatgaagaaccccaaaggatactactgcgctttacgccacgggttgcctatcgggtgaaa
gaaagtctgtggcatcctacccaaattataacagaacaggataatggctcgctcttatgg
gaagctgagattgcagaaccacaggaaatgcttccctggatccggggctggggtgcagac
tgcgaagtactagagccaaagtacctgcgggagacccttgaacgagaagtgaggaagctt
gcaaaactttatggaattgggaatattagcggaccgaagtcatccttttttgcccatcgt
cgagagggtgaagaccgcgaagactggcagcccctcatcgaacatctgaaaaaaacagcg
gaaatggcgcgcgatttctgcgctgatgccaatatcgcagaactggcgtatatcgcgggg
ctgattcacgatctgggtaaatattccgacgcgtttcaaaaacggctggaagggacaggt
ccgcgggtggagcattcaaccgctggagcaaaagaactcaaggcattgctcaaagggacg
ccgcaggaagtattcgctcacttactggtgtatcccattatgggacatcacacaggcttg
cccgattacggcaatgaaaccgacctggagggcggaactgtttgcgcgcgcttgaaaaac
caactgcccgattacagcgcgtacaagagcgaagtagatttgtacacactttcgttcccg
aaacgcttgaatattcagccgctgcgcctgcgggtgttccccgataagcctacgaaagat
tattttgggttttcgctttcttttctggtgcgcatgatttactctgcacttgtggacgcc
gactttcaggaaaccgaaacctacatgaaaggctcaaagccgcgcggcggatatgacgac
atcacaaccctgcgagataagatgggcgcgtacctgaagcagtttgaaaatccaagcagt
gacatcaaccacaagcgcaatgagatactgcaagcctgtatcgcaaaaggcatgaatgaa
aagcctggatttttctcgctcactgtacccactggcggcggcaagacgctggcttcaatg
gcatttgcactgcatcacgccgccgagcatggcttgaagcgcgtcatctacgtcatcccg
tttaccaccattatcgagcaaaatgccaaggtgttcaaaaccatcttcggtgaagggcag
gtgctggagcatcactccaactttgactgggagggcaagaagcgcgacaaccccgatgac
cgcaccaacagcgcgcttgccaaactcaaactggcggcggaaaactgggatattcccatt
gtagtcacgaccaacgtacagttctttgagtcgctgtttgccaacaggtcatcccgctgc
cgtaaactgcacaacatcgccaaaagcgtgattatcttcgacgaagcccaaatgctgccg
cgggagtacatgcgccctgcgatggcggctgtatgggaactggtgacgaactacggtgcg
agcgcggtcttttgcaccgccacccagcctgggctggaacgctttttacccgaaaatgcc
gaagtgcgggaactcgcaccaaacccgcatgagttgttcaacttctacaagcgagtggaa
gtaaagtatgtggggacgcttcccgacgaggacctgatcacccgcttgaacgcgcacgag
caagccctgtgcatcgtcaacacccgccgccacgccagcggacttttcagtggcttggaa
ggcgaggggaattttcacctttcgacgttgatgtgtcctgcccaccgccgcaccaaactg
gaagaaatcaaagaacgcctatcaagcggaaaaccctgccgtgtggtttcgaccacggtg
atggaagcgggcattgacctagactttcccgttggctaccgcgctctctcggggctggat
tccatcaatcaggcggcgggacgtgtgaaccgtgagatgcggcgcggcgtgagcgagatg
ttcgtcttcgagccgaagtcagagtttatcaaaaaaacgccctcattcctgaaacaatcg
gcagaagtcacccgcatggtcttgcgcgaccacgccgcagagccgatttccattcctgta
atcagtgcattttttgagcggctgtatgatctgcaagacccgaacatctcgttcgatgtc
aagcgcattatggaatgtttcgacagcgcagacgccaggttcaagtacgagaccgcggcg
cgggaattccaaattattgaagattcgaccgagacggtgattatcccctacaatgaagaa
gcacaaagtctgattgaagagttgaaaagcactgactatccattttttaccctgcggaaa
cttcagccctacacggtttcgattttcacgaccgagttcgacaaactcagttcaaaagga
gtgattttgaccattgacgacacgtattacgttcttaaccctgattacatgaaagaatat
tatgattttgataaaggacttataatacctgaaaatggaggtggtgatggtttactgttt
taa

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