Gracilinema caldarium: Spica_1954
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Entry
Spica_1954 CDS
T01573
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scd
Gracilinema caldarium
Pathway
scd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spica_1954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scd03019
]
Spica_1954
03400 DNA repair and recombination proteins [BR:
scd03400
]
Spica_1954
Enzymes [BR:
scd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spica_1954
Messenger RNA biogenesis [BR:
scd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spica_1954
DNA repair and recombination proteins [BR:
scd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Spica_1954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
AAA_22
Helicase_C_2
DUF7573
Motif
Other DBs
NCBI-ProteinID:
AEJ20083
UniProt:
F8EXR9
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All DBs
Position
complement(2169066..2170790)
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AA seq
574 aa
AA seq
DB search
MGIKQKDAGEQSITEQMMSQVDYSIEALIDQGLAETGLSYLFPYQRLVIANILEAARTAG
IPFIGRNAVEQTHLVDLEEGGHEIQIDGASADETLVAGTPADTDQETWSGYGRQIVILPT
GAGKSLCFQLPARILAWPTLVIFPILALMADQERRLRSQGTPVVLLRGNQTEAERAEIAR
ILQRPANTFIIANPEVLKIAPVRRMLKDAQIAHIVIDEAHCVSQWGESFRPAYLELGEIL
ADLKAPLLTAFTATASPQILEKIRHYIFHDGEAHLVMGNPDRPNISYRIIRTLAKEAALR
HLLRVLQRPAIVFCSSRSRTEQLARSLRHTLGSRDIYFYHAGLEREEKRAVEDWFFSSSI
GVLVATCAYGMGVDKSNIRTVIHFDCPDLVEAYLQEAGRAGRDGKPSTAVLLWGPEDAMR
TGPMAEYGNNMEQCRREQLLAQLTGIGPGEIKGSQVSVGPECTAVQDEASHTAEYGSGPA
TCTGDEHSCDICSGTAQKTWREAQALVRLIHRNPRFFTLNEAADWVSKQEHLDLSREEAR
RAFLALLQKGTLRYSKNPLWKGTLAVCRTCPTGS
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcaaacaaaaagatgccggagagcagtcgatcaccgagcagatgatgagccaa
gtcgattattcaatcgaagcactgattgaccagggcctggcggaaacgggactcagctat
ctctttccctaccagcgcctcgtgattgccaatatccttgaggcggcccgtactgcgggg
atcccttttattggccggaacgcagtggaacaaacccacctggtggatctcgaggaaggg
ggccacgaaattcagattgatggtgcgtcggctgatgagacgctggttgctggtacgccg
gctgatactgaccaggaaacctggtcaggttatgggcggcaaatcgtgattctgcccacc
ggtgcagggaaatccctctgtttccagctgcccgcccggatccttgcctggcctaccctc
gttatttttcccattctggcactcatggcggatcaggaacggcgccttcgcagtcagggg
acaccggtggtcctgcttcgggggaaccagacagaggcagaacgggcagagattgcaagg
atcctgcaacgccctgcaaatacctttatcattgcaaacccggaggttctgaaaattgct
ccggtcaggcggatgcttaaagatgcccagattgctcacattgttattgatgaagcccac
tgtgtgagccagtggggggagagttttcggcctgcctatcttgaacttggggagatactg
gcggatctcaaggcaccccttcttacagcctttaccgccactgcaagcccccagattctc
gaaaagatccgtcactacatctttcatgatggagaagcccatctggtcatggggaaccct
gaccgtccgaatatcagctatcgaattatccggaccctggcaaaagaagcggctctgcgg
cacctcttacgggtgcttcagcggccggctattgtattctgcagttcccggtcccggaca
gaacagttggcccggtcacttcggcataccctggggagcagagatatctacttctaccat
gcgggacttgaacgggaagaaaaacgggctgtcgaagattggtttttctcgagcagcata
ggggttctggttgcaacctgcgcctatgggatgggagtagataaaagtaacatccgcacg
gtgatacattttgattgccccgacctggtagaagcctacctgcaggaagcgggccgggct
ggccgggacgggaagccctcaacagcagttctgctctggggaccggaagatgcaatgcgt
accggccctatggctgaatacggtaacaatatggaacagtgcaggcgggaacagctcttg
gcccagctcacgggtatcggtccgggggagatcaaaggttcacaggtctcagtcggccct
gaatgcactgcggtacaggacgaggcatcccataccgctgagtatggttcaggcccggcg
acctgtacgggggatgaacattcctgcgatatctgttccggcacagcccaaaaaacctgg
cgggaagcacaggccctggtacggctcatccaccggaatccccgtttttttaccctgaac
gaagctgcagactgggtatcgaaacaagaacatcttgatctttcccgggaagaagctcga
cgggccttcctggcgctcttacaaaaaggcaccctgcgatatagtaaaaatcccctctgg
aaggggaccctagcagtttgtcggacttgtccaacaggttcctaa
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